<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20270

Description Uncharacterized protein
SequenceMEGGGGSWRAHLPWGSRQRVVRRIFEVLKRSFPADLTEGLIDLQRVAERLEWRIYSVARDQNEYLQRISLRVLYFSSESPLLLEPRPTQMALPSNELSHRREVDHSDTEEDLLDRDRPRSHKKLCEDDRLSDLPDSMLHHIMSFLSAKEAARTCFGNDRVRFSKFVEHLLQSRAPASLDTFCLHTCALDRACNWIDHAIKHNVRVLEFTEDARWEPLYLDPQCLAFSSEFLTCLKVTNVALDGSVFDPLSRTCPSLETLQLIGSFFEVSEISSNSLKRLDIIGCFFSKDLMIRTPNLISLCLESPQCKCAWFNDPSKTTAAITL
Length324
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.08
Grand average of hydropathy-0.284
Instability index53.18
Isoelectric point5.96
Molecular weight37206.06
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20270
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     171.86|      32|      40|     144|     183|       1
---------------------------------------------------------------------------
  103-  126 (31.17/11.53)	.............VDHSDTEEDLLDRD.RPRSHKKLCE
  152-  183 (57.78/38.93)	RTCFGNDR.....VRFSKFVEHLLQSR.APASLDTFCL
  190-  224 (40.64/15.01)	RACNWIDHaikhnVRVLEFTE...DARwEPLYLDPQCL
  232-  261 (42.27/18.60)	.TCLKVTN.....VALDGSVFDPL.SR.TCPSLETLQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.01|      18|      24|       7|      26|       2
---------------------------------------------------------------------------
    7-   24 (36.74/28.04)	SWRAHLPWG..SRQRVVRRI
   31-   50 (26.26/11.54)	SFPADLTEGliDLQRVAERL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.47|      17|      32|      51|      67|       3
---------------------------------------------------------------------------
   51-   67 (31.25/25.95)	EWRIYSVARDQNEYLQR
   84-  100 (31.22/25.92)	EPRPTQMALPSNELSHR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20270 with Med15 domain of Kingdom Viridiplantae
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