<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20266

Description Uncharacterized protein
SequenceMEILGPSPLPSPCPLLRCGGRRRGQHRGEAWVHVAVGRSPEKTLGLLRWALRRFGKCRIVLLHVHQPSPLIPTLLGKIPAVQATEELVLSHRKSEKEETDRVLLAYLAFCRRAQVQAKLLLTENDHIHDGILDLVNQYRIANLVMGSTPDSCFKLKYGKESLMASNAPAFCQIWFVWRGRHIWTREASAATDNTAPVHYQEDVMTAERIRFSSYSNNAGTILDEGHATGEALMTADLSPGIVSDYDGYEALGEHEANHFYSMNIANWQDAESAALNSTFCSDSSVHMNTLPSHSKEVLDTNLKKVMMVADGSRKEAFVELLKRKETESKVASAFARAKDSDSAKKHEIEMRGELEVLLVATRKQHEDLLKNKERAVAALESSMKRLAILDARAAKIKLQMDEFSVELEVIQSSIESLRQKKLKLPKLEDRHTDQARGLTYSHATLSKCMSNAFGDDLYSFEEFTLLDMQSTTCKFSESFKIRSHSHGCVYKGEIMNRTVMIYKLHSHSIESVKQFQQEVYILSKARHPHLLTLVGACPEALCLIYEFLPSESLHDRLFSRCNSHWLPWKIRARIVTEISGALLFLHSCKPQMIIHGNLKLENILLDTECHCKIADFGISQLFTDDMKDCPSFARGSELKGSFPHADTEYKRSKIMASKSDIYYFGMVILQLLTGKQELVGLAGEVRRAMSCGKLSSILDPTAGQWPLEVAGKLAELGLRYSETSSQDRLELTLETVRDLEQLYFTREGRAPSSFLCPILQEIMHDPQVCADGLTYEGRAIREWMDSGREMSPVTSLKLEHRNLTPNHALRFAIQDWLRHSHSPMKL
Length826
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.07
Grand average of hydropathy-0.307
Instability index48.38
Isoelectric point7.22
Molecular weight93309.10
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20266
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.34|      15|      59|       6|      21|       1
---------------------------------------------------------------------------
    6-   21 (29.48/21.88)	PSPlPSPCPLLRCGGR
   38-   52 (26.87/14.66)	RSP.EKTLGLLRWALR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.68|      24|      66|     539|     563|       2
---------------------------------------------------------------------------
  539-  563 (38.06/30.26)	EALCLIYEFLPSESLHDRLfSRCNS
  581-  598 (18.56/ 7.71)	.ALLFLHSCKPQMIIHGNL......
  608-  631 (43.06/28.77)	ECHCKIADFGISQLFTDDM.KDCPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.89|      41|      48|     304|     351|       3
---------------------------------------------------------------------------
  301-  344 (56.53/47.59)	NLK...KVMMVAdgSRKEaFVELLKRKETE.SKVASAFARAK..DSDSAK
  349-  395 (51.36/24.90)	EMRgelEVLLVA..TRKQ.HEDLLKNKERAvAALESSMKRLAilDARAAK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20266 with Med32 domain of Kingdom Viridiplantae
Unable to open file!