<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20264

Description Uncharacterized protein
SequenceMQDSAAEGPHPWSQDLDPLLRPQVLEKIVRTLAQVYHGQLDSTEDLNRVAARFENKVFHKANSKGDYLRRVSYRLVTLELKQKQKLLQRAPSIHHHQVQMGSHMRPVDSVHAINGGNSSITAQVPSISTHGRQSSQLQSLPMTSLVSGLVPNQNMAYPLAPNTHANVKQEHIEVTRKPGQTLNSRQASTTPSAPSVQLSQQMVQPVASEKLKQLALQMQPSDFSGCNSISITQPQGQPLVQPNVQQNPFGKNGMLPKELLMVNQKGLGFNQQQTDREKYQMRVAQQANITKVHDGHPGARNSQPGATVGLRSASRMREQGALNEHIEMEPQPMALPQQLITASQQNILFSTMGSAGEVDWREEIFQKIKPLMDAYLSELMELDKVISFPKLSQKQFELLPNDRAQQYRYRVHLKQKTKLILKFLLVEKSSIPDNYRGQLSTFLKSIQDLLGFYRRSKNLRMDARNKYQISNGQPKIINLIGDQAPSSGGTSHRNQQEKLVNSQLTKDIIITTPAAHHEINSNSLLGVGSSCFPEKTRGSLQPLAIDKLQECCTQTLSHVIKSGIVKVSSPSASLVCTSPSPITTPSAAKAKASSSVSVKSTLSSPVAKPGVVKVASSCASVNSMLPSSFAESASIQAVSPCASAKSTFPSSPFAMSGVIETTSSVTNSGSDPVSLPCPSVHPTSSDNFERFYALLLQDISATTSAQTVVGGIATNAENCIKQVTTTKPIMPASPLLAETVDHQAEDNEHPGNEIPVAKKPIDRLLHAVRTSSPAMLCSAANSVCSVFKMNDWVQQSEMDTFEDWAFFSEQCGSSTANKMKRVLESTSLYSESAPFDCTGSEAESSAECGARRRKTQNAKDTLLDEINSANSMLLDTFISIASDNGTDGISSSSGGTLIKLSYTATSLASDLVSLVATPGMCIVMPVKLLVPADYPRSSPMLVCDQGDEQMRKSFSDISGTVDVAFRQALYGLAEPMSVLDIARAWDASVRRAVVEFAQRHGGGTFSSSYGEWARC
Length1015
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.05
Grand average of hydropathy-0.352
Instability index50.31
Isoelectric point8.63
Molecular weight110309.81
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20264
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     209.89|      33|      34|     195|     227|       1
---------------------------------------------------------------------------
  153-  193 (21.12/ 6.31)	......QNMAYPLAPNthaNVKQEHI......EVtrkpgqtlnsrQASTTPSA
  194-  226 (53.70/27.18)	PSVQLSQQMVQPVASE...KLKQLAL......QM...........QPSDFSGC
  227-  253 (37.02/16.49)	NSISITQPQGQP........LVQPNV......QQ...........NPFGKNG.
  570-  587 (29.71/11.81)	PSASLVCTSPSPI...................................TTPSA
  594-  632 (36.48/16.15)	SSVSVKSTLSSPVAKP...GVVKVASscasvnSM...........LPSSFAES
  633-  651 (31.85/13.19)	ASIQAVS....PCAS..............................AKSTFPSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.82|      14|      99|     424|     439|       2
---------------------------------------------------------------------------
  426-  439 (25.51/21.05)	VEKSSIPDNYRGQL
  527-  540 (26.31/13.70)	VGSSCFPEKTRGSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.26|      24|      33|      91|     115|       3
---------------------------------------------------------------------------
   91-  115 (40.90/27.76)	PSIHHHQVQmGSHMRPVDSVHAING
  125-  148 (41.35/23.18)	PSISTHGRQ.SSQLQSLPMTSLVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     161.34|      36|      36|     777|     812|       4
---------------------------------------------------------------------------
  714-  751 (51.35/35.98)	TNAENCIKQVTTTKPIMPAS.PLlaETVDHQAEDNEHPG
  777-  812 (64.47/47.44)	CSAANSVCSVFKMNDWVQQS.EM..DTFEDWAFFSEQCG
  814-  849 (45.52/30.89)	.STANKMKRVLESTSLYSESaPF..DCTGSEAESSAECG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     130.56|      34|      48|     343|     376|       6
---------------------------------------------------------------------------
  314-  342 (19.76/11.34)	.......SRMREQGALN..EHIEMEPQPmalpqqLITA..
  343-  376 (58.75/52.52)	SQQNILFSTMGSAGEVDWREEIFQKIKP......LMDAYL
  392-  424 (52.06/45.45)	SQKQFELLPNDRAQQYRYRVHLKQKTK.......LILKFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.44|      19|      21|      34|      53|       7
---------------------------------------------------------------------------
   34-   53 (29.32/23.53)	QVYHgQLDSTED.LNRVAARF
   56-   75 (29.13/17.76)	KVFH.KANSKGDyLRRVSYRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.39|      10|      22|     473|     482|       8
---------------------------------------------------------------------------
  473-  482 (18.27/12.74)	QPKIIN..LIGD
  496-  507 (12.13/ 6.00)	QEKLVNsqLTKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.29|      24|      32|     861|     885|       9
---------------------------------------------------------------------------
  861-  885 (34.68/27.35)	TLLDEINSANSMLLDtFISIASDNG
  896-  919 (37.61/24.65)	TLIKLSYTATSLASD.LVSLVATPG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20264 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FSGCNSISITQPQGQPLVQPNVQQNPFGKNGMLPK
2) LLQRAPSIHHHQVQMGSHMRPVDSVHAINGG
3) LMVNQKGLGFNQQQTDREKYQMRVAQQANITKVHDGHPGARNSQPGATVGLRSASRMREQGALNEHIEMEP
4) PASPLLAETVDHQAEDNEHPGNEIPVAKKP
5) PNQNMAYPLAPNTHANVKQEHIEVTRKPGQTLNSRQASTTPSAPSVQLSQQMVQ
223
86
260
731
151
257
116
330
760
204










Molecular Recognition Features






MoRF SequenceStartStop




NANANA