<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20263

Description Uncharacterized protein
SequenceMPEHDRGPHLWHEDLDPLMRLRMLTKIVRKLAQAYHGQLDSAEDLKKLAVKFENKVFHEANSKVIFFPLWSIEMYHLHLKHCVTSLDQEQKQLQCAAPGVQQQIQMGCRVEPVDAVQATHGGNSSVTSMSLVASTVSSHRRRLSQLQSLPMTHQASDPVPLQHTGYPFAPNMHIKVKQEQSEVMGMPGHSLNSQPASVTPLAPGVQPSQPMIQPIATQNQKQPQATQIQDPNFLICNQTSIAHSQGQPIKTLKDAYLSEIMELDQVFLLPDIPQLESLPQDIAEKYRFKVDMKHNIKMVLKFLLLEKSNIPENLRGKLSVLVKIIHALLGSYRKSKDLKAEMDARHKPHICRGHPQIMNLSRDPDHSGGAASHHNQEDRLLESQLRQNILSTTAACPQQNNSKHLLGAASSCLPEKSPGSLWALPTKNHQEFCTLLPVTKPGLVRISSLPNSQKSKSPSPIAEPDAVKVADSTSILATLPSLVAKIGDVKVASSSALLKVTSSQNVKCVSASQLQDADILAATAAAVESIAGEAVTQAANESKLVTLPKPIMLVSPVQTEKPKHPTEDHQLATPLRDSAAIHAGSHCTSVKSTLPSSISMSAVIEIASPYAPPKSTLSSPVSDSGVDLIASAKVTSSETINSISASQLPDSLAAAGAATESAAGVATTAANGCKQVTPTKPTMPILPFPPVEIPVRSTEYQQKPTPLPISAAIHVASPCASEKSTLPLHFSMSGVIETTSLVTNSGCAPVTLPSPSVQPTSSENVESFSALLLEDNSAAITAQDAVGGTAAEAANDSKLVTTTYPIKTASAFQAETTYHSTANDEHGGAEKQVAKKPIINRLIDAVRTSSPAMLCHSANSICSVLDMSYQAPHRENDVFQDWAFFSEQGGSSTLNKMKRILEGTSSCSKAQTLESMDGIWMASDHGASEVESNAEHNAKRQRTQNDNNGVLLDEISSVNSMLFDTIISIVDDKGTAVITPSNGMTMIKFSYTAMSLAPDLKSLFAESEMPIVMPVKLFVPADYPRSSPVLVCDQGDEELRKRLSGISSTADAAFRHALNGLPEPMTVTDMAKAWDASVRRTIVEFAKRLGGGTFSSTYGQWERF
Length1104
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.04
Grand average of hydropathy-0.246
Instability index53.70
Isoelectric point6.45
Molecular weight118915.99
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20263
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     741.34|     128|     131|     493|     620|       1
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  208-  327 (124.38/66.61)	.......................SQP............MI...Q...PIATQNQKQPQATQIQDPNFLICNQTSIAHSQGQPIktLKDAYLSEIME.....LDQVFLLP...DIPQLESlPQDIA..EKY.....R.FK.V..DM..K.....HNIKM...VLKFllleKSNIPENLrgKLSVLVKII.......HA
  355-  472 (119.07/63.43)	PQIMNLSR.D............PDHSggaashhnqedrLL...E...............SQLRQ.NILSTTAAC...........PQQNNSKHLLGaasscLPEK.......SP.GSLW.A.LPT..KNH.....QeFC.TllPV..TKPGLVRISSL...PNSQ....KSKSPSPI..AEPDAVKVA.....DS..
  473-  611 (192.56/107.48)	..TSILATlPslvakigdvkvaSSSA............LL...K...VTSSQNVKCVSASQLQDADILAATAAAVESIAGEAV..TQAANESKLVT.....LPKPIMLV...SPVQTEK.PKHPT..EDH.....Q.LA.T..PL..RDSAAIHAGSH...CTSV....KSTLPSSI..SMSAVIEIA.....SPYA
  612-  748 (181.37/100.77)	PPKSTLSS.P.........vsdSGVD............LIasaK...VTSSETINSISASQLPDS..LAAAGAATESAAGVAT..T.AANGCKQVT.....PTKPTMPIlpfPPV..EI.PVRST..EYQ.....Q.KP.T..PL..PISAAIHVASP...CASE....KSTLPLHF..SMSGVIETTslvtnSGCA
  749-  868 (123.96/66.36)	P..VTLPS.P..................................svqPTSSENVESFSALLLEDN...SAAITAQDAVGGTA...AEAANDSKLVT.....TTYPIKTA...SAFQAET.TYHSTanDEHggaekQ.VAkK..PIinRLIDAVRTSSPamlCHSA....NS.ICSVL..DMS...............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.50|      17|     104|      85|     101|       2
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   85-  101 (30.54/16.75)	SLDQEQKQLQCAAPGVQ
  190-  206 (27.96/14.70)	SLNSQPASVTPLAPGVQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20263 with Med15 domain of Kingdom Viridiplantae
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