<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20261

Description Uncharacterized protein
SequenceMDRDERLRRALTAFGGDAWALVDAALAAAAQDRPGELRARRDGIVERLYAAAGCSSCDARPPPPPRAALAAAGLDEEDGEEAAAPVSPVAEADAAEAGDAEAEELGASGEPGLESRIVAIRDFLEDPDQPDDELVSLLQNLADMDVTYKALQETDIGRHVNGLRKHPSAEVRRLVKQLIRKWKEIVDEWVRLHNSGGDGGSSIIADGDSPEKIQGRSHQSPRVSGFQYSPSPQRHNGSTSEKTNNGLEPTMDMKRRPSPAPTHHNSRQMNNNHHSTTMSYAPAKVTRDHKDSLLDLDRLDSARKRLQENYQEAQNAKKQRTIQVMDINDIPKPKNRNALIRKSGSGGLPARHR
Length353
PositionUnknown
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.03
Grand average of hydropathy-0.861
Instability index59.46
Isoelectric point6.04
Molecular weight38644.38
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20261
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.68|      25|      26|      80|     105|       1
---------------------------------------------------------------------------
   58-   78 (28.32/ 9.12)	DARPPPPP......RAALAAAGLDEED....
   81-  105 (39.33/20.70)	EAAAPVSP......VAEADAAEAGDAEAEEL
  107-  134 (25.04/ 9.62)	...ASGEPglesriVAIRDFLEDPDQPDDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.18|      22|      24|     242|     264|       3
---------------------------------------------------------------------------
  242-  264 (36.72/30.31)	KTNNGLEPTmDMKRRPSPAPTHH
  268-  289 (40.45/27.77)	QMNNNHHST.TMSYAPAKVTRDH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20261 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CSSCDARPPPPPRAALAAAGLDEEDGEEAAAPVSPVAEADAAEAGDAEAEELGASG
2) GGDGGSSIIADGDSPEKIQGRSHQSPRVSGFQYSPSPQRHNGSTSEKTNNGLEPTMDMKRRPSPAPTHHNSRQMNNNHHSTTMSYAPAKVTRDHKDSLLDLDRLDSARKRLQENYQEAQNAKKQRTIQVMDINDIPKPKNRNALIRKSGSGGLPARHR
54
196
109
353










Molecular Recognition Features






MoRF SequenceStartStop




1) ESRIVAIRDFLED
2) KNRNALIRKSGSGGLPARHR
3) LVKQLIRKWKEI
4) RAALAAAGL
5) RDERLRRAL
6) RDGIVERLYAAAGCSSCDAR
114
334
174
66
3
41
126
353
185
74
11
60