<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20260

Description Uncharacterized protein
SequenceMQRYTGAAGNTAGFSGAAPGARDTARLDGSPFSSSNYSVSSRRQQQLAPYKLKCDKEPLNNKLGPPDFYPQTPNCPEETLTKEYAQAGYKETVEGIEEAREIVLSQIPHFCKPDVVVKCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKSGVYPEQRPCNEDTRRKWAEALAQPNKRLRSLSEHVPHGYRRKSLFEVLTRYNVPLLRATWFVKVTYLNQARPTPNSISAGASDNQRSNQWTKDVVEYLQQILDELCSKEGTVVPPSFREQSSPGLSGTNQIKVKTEASPAGGDGEEPLVHYKWRYMVRLIQWHLTEELLVPSVLIEWLSNQLQERDSVDVLELLLPIVLGLVDTITLSQTYVRMFVELLIRRLNDASVVDSPKRPSVSSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYGRGALLKITGGGGIASSKRRDAYRYLSCGYAVCSIQKRASDLATVANPNLQVRGAAKVVQALDKALVTGNLSMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRASPCQNVKFTGRRDLSQIHVAVSILKNKMDELNNLSRSKSSNRITTNNNVKGSSLNDGFLVAAAVNDSSGVRSNAKNVDEKKDTNNIFESPGPLHDIIVCWLDQHEVSSVAGFTRVDVLIVELIRNGIFYPQAYVRQLIISGITDKNDTMLDVERKRRHHRTLKQLPGSSLFDILEETRTAEEQQLYEMMSTYSSERRLVLSELSCGPSFYASSRGEHTSSSGIRKQNDHTVASGGDKHGRVPEQVEDVKALVSSLLSFTYPHPVESEPCQIKTSFQESSTSTLSQVEIGEAKNGCEDCMRSKGQKLDDGATPFQGFPLIQSDEEDIWWVRKGTKLHESFNVEPAQKSVKQTSRGRAKVVRKTQSLAQLAAARIEGSQGASTSHVCESKMSCPHHKPNNDGDNVKDFDHTRTTNLTEVGKSLKRLRLIERRSVSLWLLKSIRQLVEGNEMTASKTTNSISTLSLQPDDKSVSKWRLGDEELLSVLYVLDTCCDLVSGARFLVWLLAKIRGGLGSSGQPGRSSMHMRNREHQVCQVSEALVFSSLLRYENILLATDILPDFLSASVNRNSVSATARHPGSAAFAYVRYFLKKYRDVASVARWEKNFRTTCDQRLLAELDNGRSIDGDLVSSSGISAGDEIDEQVRQKLNGRSSRLLQNMKEIVQRQADEVQRSLKEKKVLAAPKSPPSFEKEDSYQISHDIVLGLVECIRQNGGANPDGDLSIVASAVSAVVVNAGHVIAKHLDFAGGNYQGVNSVSNSLNFVRHTLRIHINSLCLLKESLGDRFSRVFEIALAVEASAAVTAAFAPAKIHRNQFQPSPETHDAYGNNTSDLGNSGKGFVGRTAKVAAAVSALVVGAIVHGAVSLERMVAALKVKDGLDILQLLRGLKTSTNGVSRPTGTFRMENSTEVSAHWFRILLGNCRTVYDGLIADILGESYILALSRLQQTLPLSVIFPPAYSMFAMVLWRRYIFNREDPQLYQSLSNAINDITRHQPFREICFRNTHQLYNLLASDVGDSEFAAMLESHTPDRNSKILPFIPLRARLFLDALIDCNTPTTTQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKFHWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPNAEGFALSDSEKGFTEVILSRLIARPDAAPLYSEVVHLLGKLQESLVMDVKWILQGQDAILGRRSTRQQLVHIAQRKGLPTKAQVWKPWGWSSLLSDVIANKTAKRKLEVTSIEEGEVVDDTVDAKRPSKTSSHSVDRSVEGTRSINKYLTEKALAELVLPCIDRSSADIRGILSGDLIKQMGAISEHIKAISRNGAKQAGSVPSGNEMPSSKSSGRKGIRGGSPNIGRRTPVGNDPSPPSASALRAALWLRLQFIIRLLPVIMADRSMRHTLASAILGLLATRMIYEDADLPLPPTNATALRREVDSLLEPPLDVLLDRPGESLFERLLCVLHALLGSCKPSWLKSRSASKSTIRTQRDFSAFDNEAAEGLQSALDHMELPETIRRRIQAAMPILPPSRHPSIQCQPSQLSLAALTPLQSCTSSAGPQQKSSCVSWVPTNVSSRSKAVLPSHDPEMEVDPWALLEDGTSCPFTSSGSNGTSGVTGDHANLKACSWLKGTVRVRRTELTYIGSLDDDS
Length2205
PositionKinase
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.305
Instability index48.73
Isoelectric point8.65
Molecular weight243413.13
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20260
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.99|      27|      27|    1881|    1907|       1
---------------------------------------------------------------------------
 1852- 1879 (34.13/18.39)	RSSADIRG..ILSGDlikQ.MGAI.SEHIKAI
 1881- 1907 (48.13/29.32)	RNGAKQAG.SVPSGN...E.MPSSKSSGRKGI
 1908- 1933 (27.72/13.38)	RGGSPNIGrRTPVGN...DpSPPSASALR...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.41|      11|      18|      49|      62|       2
---------------------------------------------------------------------------
   49-   59 (21.31/16.73)	PYKLKCDKEPL
   70-   80 (22.10/ 7.69)	PQTPNCPEETL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.38|      17|      17|    1693|    1709|       5
---------------------------------------------------------------------------
 1693- 1709 (27.38/17.31)	ALSDSEKGFTEVI..LSRL
 1711- 1729 (24.00/14.17)	ARPDAAPLYSEVVhlLGKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.42|      17|      17|     433|     449|       6
---------------------------------------------------------------------------
  433-  449 (27.19/14.43)	ALLKITGGGGIASSKRR
  451-  467 (31.23/17.65)	AYRYLSCGYAVCSIQKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.74|      21|      27|    1528|    1548|       8
---------------------------------------------------------------------------
 1528- 1548 (38.24/25.95)	RYIFNREDPQLYQSLSNAIND
 1556- 1576 (38.50/26.17)	REICFRNTHQLYNLLASDVGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.87|      14|      19|    1261|    1274|       9
---------------------------------------------------------------------------
 1261- 1274 (24.71/20.14)	IVLGLVECIRQNGG
 1283- 1296 (21.17/15.87)	IVASAVSAVVVNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.30|      11|      19|     468|     479|      13
---------------------------------------------------------------------------
  468-  479 (13.91/13.99)	ASDLATVANpNL
  490-  500 (18.39/11.23)	ALDKALVTG.NL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.99|      12|      28|    1171|    1183|      15
---------------------------------------------------------------------------
 1171- 1183 (16.46/13.02)	DQRLLAELdNGRS
 1201- 1212 (21.53/11.79)	DEQVRQKL.NGRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.69|      16|      22|    1393|    1408|      16
---------------------------------------------------------------------------
 1393- 1408 (27.23/18.80)	GNSGKGFVGRTAKVAA
 1416- 1431 (26.46/18.03)	GAIVHGAVSLERMVAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20260 with Med12 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NGAKQAGSVPSGNEMPSSKSSGRKGIRGGSPNIGRRTPVGNDPSP
2) RGEHTSSSGIRKQNDHTVASGGDKHGRVPEQ
3) YTGAAGNTAGFSGAAPGARDTARLDGSPFSSSNYSVS
1882
776
4
1926
806
40










Molecular Recognition Features






MoRF SequenceStartStop




NANANA