<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20260

Description Uncharacterized protein
SequenceMQRYTGAAGNTAGFSGAAPGARDTARLDGSPFSSSNYSVSSRRQQQLAPYKLKCDKEPLNNKLGPPDFYPQTPNCPEETLTKEYAQAGYKETVEGIEEAREIVLSQIPHFCKPDVVVKCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKSGVYPEQRPCNEDTRRKWAEALAQPNKRLRSLSEHVPHGYRRKSLFEVLTRYNVPLLRATWFVKVTYLNQARPTPNSISAGASDNQRSNQWTKDVVEYLQQILDELCSKEGTVVPPSFREQSSPGLSGTNQIKVKTEASPAGGDGEEPLVHYKWRYMVRLIQWHLTEELLVPSVLIEWLSNQLQERDSVDVLELLLPIVLGLVDTITLSQTYVRMFVELLIRRLNDASVVDSPKRPSVSSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYGRGALLKITGGGGIASSKRRDAYRYLSCGYAVCSIQKRASDLATVANPNLQVRGAAKVVQALDKALVTGNLSMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRASPCQNVKFTGRRDLSQIHVAVSILKNKMDELNNLSRSKSSNRITTNNNVKGSSLNDGFLVAAAVNDSSGVRSNAKNVDEKKDTNNIFESPGPLHDIIVCWLDQHEVSSVAGFTRVDVLIVELIRNGIFYPQAYVRQLIISGITDKNDTMLDVERKRRHHRTLKQLPGSSLFDILEETRTAEEQQLYEMMSTYSSERRLVLSELSCGPSFYASSRGEHTSSSGIRKQNDHTVASGGDKHGRVPEQVEDVKALVSSLLSFTYPHPVESEPCQIKTSFQESSTSTLSQVEIGEAKNGCEDCMRSKGQKLDDGATPFQGFPLIQSDEEDIWWVRKGTKLHESFNVEPAQKSVKQTSRGRAKVVRKTQSLAQLAAARIEGSQGASTSHVCESKMSCPHHKPNNDGDNVKDFDHTRTTNLTEVGKSLKRLRLIERRSVSLWLLKSIRQLVEGNEMTASKTTNSISTLSLQPDDKSVSKWRLGDEELLSVLYVLDTCCDLVSGARFLVWLLAKIRGGLGSSGQPGRSSMHMRNREHQVCQVSEALVFSSLLRYENILLATDILPDFLSASVNRNSVSATARHPGSAAFAYVRYFLKKYRDVASVARWEKNFRTTCDQRLLAELDNGRSIDGDLVSSSGISAGDEIDEQVRQKLNGRSSRLLQNMKEIVQRQADEVQRSLKEKKVLAAPKSPPSFEKEDSYQISHDIVLGLVECIRQNGGANPDGDLSIVASAVSAVVVNAGHVIAKHLDFAGGNYQGVNSVSNSLNFVRHTLRIHINSLCLLKESLGDRFSRVFEIALAVEASAAVTAAFAPAKIHRNQFQPSPETHDAYGNNTSDLGNSGKGFVGRTAKVAAAVSALVVGAIVHGAVSLERMVAALKVKDGLDILQLLRGLKTSTNGVSRPTGTFRMENSTEVSAHWFRILLGNCRTVYDGLIADILGESYILALSRLQQTLPLSVIFPPAYSMFAMVLWRRYIFNREDPQLYQSLSNAINDITRHQPFREICFRNTHQLYNLLASDVGDSEFAAMLESHTPDRNSKILPFIPLRARLFLDALIDCNTPTTTQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKFHWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPNAEGFALSDSEKGFTEVILSRLIARPDAAPLYSEVVHLLGKLQESLVMDVKWILQGQDAILGRRSTRQQLVHIAQRKGLPTKAQVWKPWGWSSLLSDVIANKTAKRKLEVTSIEEGEVVDDTVDAKRPSKTSSHSVDRSVEGTRSINKYLTEKALAELVLPCIDRSSADIRGILSGDLIKQMGAISEHIKAISRNGAKQAGSVPSGNEMPSSKSSGRKGIRGGSPNIGRRTPVGNDPSPPSASALRAALWLRLQFIIRLLPVIMADRSMRHTLASAILGLLATRMIYEDADLPLPPTNATALRREVDSLLEPPLDVLLDRPGESLFERLLCVLHALLGSCKPSWLKSRSASKSTIRTQRDFSAFDNEAAEGLQSALDHMELPETIRRRIQAAMPILPPSRHPSIQCQPSQLSLAALTPLQSCTSSAGPQQKSSCVSWVPTNVSSRSKAVLPSHDPEMEVDPWALLEDGTSCPFTSSGSNGTSGVTGDHANLKACSWLKGTVRVRRTELTYIGSLDDDS
Length2205
PositionKinase
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.305
Instability index48.73
Isoelectric point8.65
Molecular weight243413.13
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20260
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.99|      27|      27|    1881|    1907|       1
---------------------------------------------------------------------------
 1852- 1879 (34.13/18.39)	RSSADIRG..ILSGDlikQ.MGAI.SEHIKAI
 1881- 1907 (48.13/29.32)	RNGAKQAG.SVPSGN...E.MPSSKSSGRKGI
 1908- 1933 (27.72/13.38)	RGGSPNIGrRTPVGN...DpSPPSASALR...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.41|      11|      18|      49|      62|       2
---------------------------------------------------------------------------
   49-   59 (21.31/16.73)	PYKLKCDKEPL
   70-   80 (22.10/ 7.69)	PQTPNCPEETL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.38|      17|      17|    1693|    1709|       5
---------------------------------------------------------------------------
 1693- 1709 (27.38/17.31)	ALSDSEKGFTEVI..LSRL
 1711- 1729 (24.00/14.17)	ARPDAAPLYSEVVhlLGKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.42|      17|      17|     433|     449|       6
---------------------------------------------------------------------------
  433-  449 (27.19/14.43)	ALLKITGGGGIASSKRR
  451-  467 (31.23/17.65)	AYRYLSCGYAVCSIQKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.74|      21|      27|    1528|    1548|       8
---------------------------------------------------------------------------
 1528- 1548 (38.24/25.95)	RYIFNREDPQLYQSLSNAIND
 1556- 1576 (38.50/26.17)	REICFRNTHQLYNLLASDVGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.87|      14|      19|    1261|    1274|       9
---------------------------------------------------------------------------
 1261- 1274 (24.71/20.14)	IVLGLVECIRQNGG
 1283- 1296 (21.17/15.87)	IVASAVSAVVVNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.30|      11|      19|     468|     479|      13
---------------------------------------------------------------------------
  468-  479 (13.91/13.99)	ASDLATVANpNL
  490-  500 (18.39/11.23)	ALDKALVTG.NL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.99|      12|      28|    1171|    1183|      15
---------------------------------------------------------------------------
 1171- 1183 (16.46/13.02)	DQRLLAELdNGRS
 1201- 1212 (21.53/11.79)	DEQVRQKL.NGRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.69|      16|      22|    1393|    1408|      16
---------------------------------------------------------------------------
 1393- 1408 (27.23/18.80)	GNSGKGFVGRTAKVAA
 1416- 1431 (26.46/18.03)	GAIVHGAVSLERMVAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20260 with Med12 domain of Kingdom Viridiplantae
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