<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20259

Description Uncharacterized protein
SequenceMNVYCHGTILYSIWPVHGWSTSFMFAVRRQQQLAPYKLKCDKEPLNNKLGPPDFYPQTPNCPEETLTKEYAQAGYKETVEGIEEAREIVLSQIPHFCKPDVVVKCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKSGVYPEQRPCNEDTRRKWAEALAQPNKRLRSLSEHVPHGYRRKSLFEVLTRYNVPLLRATWFVKVTYLNQARPTPNSISAGASDNQRSNQWTKDVVEYLQQILDELCSKEGTVVPPSFREQSSPGLSGTNQIKVKTEASPAGGDGEEPLVHYKWRYMVRLIQWHLTEELLVPSVLIEWLSNQLQERDSVDVLELLLPIVLGLVDTITLSQTYVRMFVELLIRRLNDASVVDSPKRPSVSSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYGRGALLKITGGGGIASSKRRDAYRYLSCGYAVCSIQKRASDLATVANPNLQVRGAAKVVQALDKALVTGNLSMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRASPCQNVKFTGRRDLSQIHVAVSILKNKMDELNNLSRSKSSNRITTNNNVKGSSLNDGFLVAAAVNDSSGVRSNAKNVDEKKDTNNIFESPGPLHDIIVCWLDQHEVSSVAGFTRVDVLIVELIRNGIFYPQAYVRQLIISGITDKNDTMLDVERKRRHHRTLKQLPGSSLFDILEETRTAEEQQLYEMMSTYSSERRLVLSELSCGPSFYASSRGEHTSSSGIRKQNDHTVASGGDKHGRVPEQVEDVKALVSSLLSFTYPHPVESEPCQIKTSFQESSTSTLSQVEIGEAKNGCEDCMRSKGQKLDDGATPFQGFPLIQSDEEDIWWVRKGTKLHESFNVEPAQKSVKQTSRGRAKVVRKTQSLAQLAAARIEGSQGASTSHVCESKMSCPHHKPNNDGDNVKDFDHTRTTNLTEVGKSLKRLRLIERRSVSLWLLKSIRQLVEGNEMTASKTTNSISTLSLQPDDKSVSKWRLGDEELLSVLYVLDTCCDLVSGARFLVWLLAKIRGGLGSSGQPGRSSMHMRNREHQVCQVSEALVFSSLLRYENILLATDILPDFLSASVNRNSVSATARHPGSAAFAYVRYFLKKYRDVASVARWEKNFRTTCDQRLLAELDNGRSIDGDLVSSSGISAGDEIDEQVRQKLNGRSSRLLQNMKEIVQRQADEVQRSLKEKKVLAAPKSPPSFEKEDSYQISHDIVLGLVECIRQNGGANPDGDLSIVASAVSAVVVNAGHVIAKHLDFAGGNYQGVNSVSNSLNFVRHTLRIHINSLCLLKESLGDRFSRVFEIALAVEASAAVTAAFAPAKIHRNQFQPSPETHDAYGNNTSDLGNSGKGFVGRTAKVAAAVSALVVGAIVHGAVSLERMVAALKVKDGLDILQLLRGLKTSTNGVSRPTGTFRMENSTEVSAHWFRILLGNCRTVYDGLIADILGESYILALSRLQQTLPLSVIFPPAYSMFAMVLWRRYIFNREDPQLYQSLSNAINDITRHQPFREICFRNTHQLYNLLASDVGDSEFAAMLESHTPDRNSKILPFIPLRARLFLDALIDCNTPTTTQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKFHWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPNAEGFALSDSEKGFTEVILSRLIARPDAAPLYSEVVHLLGKLQESLVMDVKWILQGQDAILGRRSTRQQLVHIAQRKGLPTKAQVWKPWGWSSLLSDVIANKTAKRKLEVTSIEEGEVVDDTVDAKRPSKTSSHSVDRSVEGTRSINKYLTEKALAELVLPCIDRSSADIRGILSGDLIKQMGAISEHIKAISRNGAKQAGSVPSGNEMPSSKSSGRKGIRGGSPNIGRRTPVGNDPSPPSASALRAALWLRLQFIIRLLPVIMADRSMRHTLASAILGLLATRMIYEDADLPLPPTNATALRREVDSLLEPPLDVLLDRPGESLFERLLCVLHALLGSCKPSWLKSRSASKSTIRTQRDFSAFDNEAAEGLQSALDHMELPETIRRRIQAAMPILPPSRHPSIQCQPSQLSLAALTPLQSCTSSAGPQQKSSCVSWVPTNVSSRSKAVLPSHDPEMEVDPWALLEDGTSCPFTSSGSNGTSGVTGDHANLKACSWLKGTVRVRRTELTYIGSLDDDS
Length2191
PositionKinase
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.289
Instability index48.87
Isoelectric point8.61
Molecular weight242489.50
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20259
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.60|      24|      26|    1863|    1887|       1
---------------------------------------------------------------------------
 1863- 1887 (39.25/26.86)	KAIsRNGAKQAG.SVPSGNE.MPSSKS
 1891- 1916 (37.35/20.72)	KGI.RGGSPNIGrRTPVGNDpSPPSAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.74|      21|      26|    1514|    1534|       2
---------------------------------------------------------------------------
 1514- 1534 (38.24/28.15)	RYIFNREDPQLYQSLSNAIND
 1542- 1562 (38.50/28.40)	REICFRNTHQLYNLLASDVGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.38|      17|      17|    1679|    1695|       5
---------------------------------------------------------------------------
 1679- 1695 (27.38/16.95)	ALSDSEKGFTEVI..LSRL
 1697- 1715 (24.00/13.87)	ARPDAAPLYSEVVhlLGKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.42|      17|      17|     419|     435|       6
---------------------------------------------------------------------------
  419-  435 (27.19/14.56)	ALLKITGGGGIASSKRR
  437-  453 (31.23/17.81)	AYRYLSCGYAVCSIQKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.09|      21|      26|    1799|    1819|       9
---------------------------------------------------------------------------
 1799- 1819 (34.76/21.54)	KRPSKTSSHSVDRSVEGTRSI
 1826- 1846 (34.33/21.17)	KALAELVLPCIDRSSADIRGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.87|      14|      19|    1247|    1260|      10
---------------------------------------------------------------------------
 1247- 1260 (24.71/15.50)	IVLGLVECIRQNGG
 1269- 1282 (21.17/12.21)	IVASAVSAVVVNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.04|      18|      27|     844|     868|      11
---------------------------------------------------------------------------
  844-  862 (31.08/38.29)	EDC..MRsKGQKLDD..GATPFQ
  872-  893 (22.96/ 6.86)	EDIwwVR.KGTKLHEsfNVEPAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.99|      12|      27|    1157|    1169|      14
---------------------------------------------------------------------------
 1157- 1169 (16.46/14.66)	DQRLLAELdNGRS
 1187- 1198 (21.53/13.31)	DEQVRQKL.NGRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.35|      40|     304|     479|     526|      15
---------------------------------------------------------------------------
  479-  526 (60.52/51.70)	KALVTGNLSMAYSSLFNDlsdalmEERWIKevSPCLQSSLMWIGTVEL
  797-  836 (68.83/40.26)	KALVSSLLSFTYPHPVES......EPCQIK..TSFQESSTSTLSQVEI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20259 with Med12 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NGAKQAGSVPSGNEMPSSKSSGRKGIRGGSPNIGRRTPVGNDPSP
2) RGEHTSSSGIRKQNDHTVASGGDKHGRVPEQ
1868
762
1912
792










Molecular Recognition Features






MoRF SequenceStartStop




NANANA