<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20258

Description Uncharacterized protein
SequenceMNVYCHGTILYSIWPVHGWSTSFMFAVRRQQQLAPYKLKCDKEPLNNKLGPPDFYPQTPNCPEETLTKEYAQAGYKETVEGIEEAREIVLSQIPHFCKPDVVVKCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKSGVYPEQRPCNEDTRRKWAEALAQPNKRLRSLSEHVPHGYRRKSLFEVLTRYNVPLLRATWFVKVTYLNQLQARPTPNSISAGASDNQRSNQWTKDVVEYLQQILDELCSKEGTVVPPSFREQSSPGLSGTNQIKVKTEASPAGGDGEEPLVHYKWRYMVRLIQWHLTEELLVPSVLIEWLSNQLQERDSVDVLELLLPIVLGLVDTITLSQTYVRMFVELLIRRLNDASVVDSPKRPSVSSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYGRGALLKITGGGGIASSKRRDAYRYLSCGYAVCSIQKRASDLATVANPNLQVRGAAKVVQALDKALVTGNLSMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRASPCQNVKFTGRRDLSQIHVAVSILKNKMDELNNLSRSKSSNRITTNNNVKGSSLNDGFLVAAAVNDSSGVRSNAKNVDEKKDTNNIFESPGPLHDIIVCWLDQHEVSSVAGFTRVDVLIVELIRNGIFYPQAYVRQLIISGITDKNDTMLDVERKRRHHRTLKQLPGSSLFDILEETRTAEEQQLYEMMSTYSSERRLVLSELSCGPSFYASSRGEHTSSSGIRKQNDHTVASGGDKHGRVPEQVEDVKALVSSLLSFTYPHPVESEPCQIKTSFQESSTSTLSQVEIGEAKNGCEDCMRSKGQKLDDGATPFQGFPLIQSDEEDIWWVRKGTKLHESFNVEPAQKSVKQTSRGRAKVVRKTQSLAQLAAARIEGSQGASTSHVCESKMSCPHHKPNNDGDNVKDFDHTRTTNLTEVGKSLKRLRLIERRSVSLWLLKSIRQLVEGNEMTASKTTNSISTLSLQPDDKSVSKWRLGDEELLSVLYVLDTCCDLVSGARFLVWLLAKIRGGLGSSGQPGRSSMHMRNREHQVCQVSEALVFSSLLRYENILLATDILPDFLSASVNRNSVSATARHPGSAAFAYVRYFLKKYRDVASVARWEKNFRTTCDQRLLAELDNGRSIDGDLVSSSGISAGDEIDEQVRQKLNGRSSRLLQNMKEIVQRQADEVQRSLKEKKVLAAPKSPPSFEKEDSYQISHDIVLGLVECIRQNGGANPDGDLSIVASAVSAVVVNAGHVIAKHLDFAGGNYQGVNSVSNSLNFVRHTLRIHINSLCLLKESLGDRFSRVFEIALAVEASAAVTAAFAPAKIHRNQFQPSPETHDAYGNNTSDLGNSGKGFVGRTAKVAAAVSALVVGAIVHGAVSLERMVAALKVKDGLDILQLLRGLKTSTNGVSRPTGTFRMENSTEVSAHWFRILLGNCRTVYDGLIADILGESYILALSRLQQTLPLSVIFPPAYSMFAMVLWRRYIFNREDPQLYQSLSNAINDITRHQPFREICFRNTHQLYNLLASDVGDSEFAAMLESHTPDRNSKILPFIPLRARLFLDALIDCNTPTTTQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKFHWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPNAEGFALSDSEKGFTEVILSRLIARPDAAPLYSEVVHLLGKLQESLVMDVKWILQGQDAILGRRSTRQQLVHIAQRKGLPTKAQVWKPWGWSSLLSDVIANKTAKRKLEVTSIEEGEVVDDTVDAKRPSKTSSHSVDRSVEGTRSINKYLTEKALAELVLPCIDRSSADIRGILSGDLIKQMGAISEHIKAISRNGAKQAGSVPSGNEMPSSKSSGRKGIRGGSPNIGRRTPVGNDPSPPSASALRAALWLRLQFIIRLLPVIMADRSMRHTLASAILGLLATRMIYEDADLPLPPTNATALRREVDSLLEPPLDVLLDRPGESLFERLLCVLHALLGSCKPSWLKSRSASKSTIRTQRDFSAFDNEAAEGLQSALDHMELPETIRRRIQAAMPILPPSRHPSIQCQPSQLSLAALTPLQSCTSSAGPQQKSSCVSWVPTNVSSRSKAVLPSHDPEMEVDPWALLEDGTSCPFTSSGSNGTSGVTGDHANLKACSWLKGTVRVRRTELTYIGSLDDDS
Length2193
PositionKinase
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.289
Instability index48.98
Isoelectric point8.61
Molecular weight242730.79
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20258
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.06|      48|      48|     949|     996|       1
---------------------------------------------------------------------------
  949-  996 (78.75/50.74)	DGDNVKDFDHTRTTNLTEVGKSLKRLRLIERRSVS.LWLLKSIRQLVEG
  998- 1046 (76.31/48.91)	EMTASKTTNSISTLSLQPDDKSVSKWRLGDEELLSvLYVLDTCCDLVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.60|      24|      26|    1865|    1889|       2
---------------------------------------------------------------------------
 1865- 1889 (39.25/28.62)	KAIsRNGAKQAG.SVPSGNE.MPSSKS
 1893- 1918 (37.35/22.08)	KGI.RGGSPNIGrRTPVGNDpSPPSAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.70|      33|      49|     328|     360|       3
---------------------------------------------------------------------------
  328-  360 (55.35/34.77)	ERDSVD..VLELLLPIVLGLVDT.ITLSQTYVRMFV
  377-  412 (48.35/29.38)	KRPSVSsvIAELLRYMVLAVPDTfVSLDCFPLPSFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.08|      27|      51|    2073|    2099|       4
---------------------------------------------------------------------------
 2073- 2099 (49.40/27.97)	PSRHPSIQCQP.SQLSLAALTPLQSCTS
 2126- 2153 (45.68/25.30)	PSHDPEMEVDPwALLEDGTSCPFTSSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.14|      25|      54|      92|     118|       5
---------------------------------------------------------------------------
   92-  118 (41.25/28.25)	QIPhfCKPDVVVKCKEAL...KKRLRAINE
  148-  175 (41.89/22.07)	QRP..CNEDTRRKWAEALaqpNKRLRSLSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.74|      21|      26|    1516|    1536|       6
---------------------------------------------------------------------------
 1516- 1536 (38.24/22.50)	RYIFNREDPQLYQSLSNAIND
 1544- 1564 (38.50/22.70)	REICFRNTHQLYNLLASDVGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.25|      25|      54|    1325|    1352|       7
---------------------------------------------------------------------------
 1325- 1352 (32.33/28.37)	LKESlGDRF.SRVFEIALAVeaSAAVTAA
 1380- 1405 (38.92/22.74)	LGNS.GKGFvGRTAKVAAAV..SALVVGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.38|      17|      19|    1681|    1697|       9
---------------------------------------------------------------------------
 1681- 1697 (27.38/15.42)	ALSDSEKGFTEVI..LSRL
 1699- 1717 (24.00/12.63)	ARPDAAPLYSEVVhlLGKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.21|      21|      26|    1801|    1821|      10
---------------------------------------------------------------------------
 1801- 1821 (34.53/23.23)	KRPSKTSSHSVDRSVEGTRSI
 1828- 1848 (32.69/21.52)	KALAELVLPCIDRSSADIRGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.87|      14|      19|    1249|    1262|      12
---------------------------------------------------------------------------
 1249- 1262 (24.71/20.65)	IVLGLVECIRQNGG
 1271- 1284 (21.17/16.32)	IVASAVSAVVVNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.48|      12|      19|     455|     467|      15
---------------------------------------------------------------------------
  455-  467 (15.47/15.17)	RASDLATVANpNL
  477-  488 (20.01/12.54)	QALDKALVTG.NL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.87|      13|      56|    1591|    1613|      17
---------------------------------------------------------------------------
 1569- 1581 (23.86/14.22)	AMLESHTP.....DRNSK
 1596- 1613 (18.00/15.60)	ALIDCNTPtttqgDGASE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20258 with Med12 domain of Kingdom Viridiplantae
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