<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20257

Description Uncharacterized protein
SequenceMQRYTGAAGNTAGFSGAAPGARDTARLDGSPFSSSNYSVSSRRQQQLAPYKLKCDKEPLNNKLGPPDFYPQTPNCPEETLTKEYAQAGYKETVEGIEEAREIVLSQIPHFCKPDVVVKCKEALKKRLRAINESRAQKRKAGQVYGVPLSGSLLIKSGVYPEQRPCNEDTRRKWAEALAQPNKRLRSLSEHVPHGYRRKSLFEVLTRYNVPLLRATWFVKVTYLNQLQARPTPNSISAGASDNQRSNQWTKDVVEYLQQILDELCSKEGTVVPPSFREQSSPGLSGTNQIKVKTEASPAGGDGEEPLVHYKWRYMVRLIQWHLTEELLVPSVLIEWLSNQLQERDSVDVLELLLPIVLGLVDTITLSQTYVRMFVELLIRRLNDASVVDSPKRPSVSSVIAELLRYMVLAVPDTFVSLDCFPLPSFVVPDVYGRGALLKITGGGGIASSKRRDAYRYLSCGYAVCSIQKRASDLATVANPNLQVRGAAKVVQALDKALVTGNLSMAYSSLFNDLSDALMEERWIKEVSPCLQSSLMWIGTVELSLICSIFFLCEWATCDYRDCRASPCQNVKFTGRRDLSQIHVAVSILKNKMDELNNLSRSKSSNRITTNNNVKGSSLNDGFLVAAAVNDSSGVRSNAKNVDEKKDTNNIFESPGPLHDIIVCWLDQHEVSSVAGFTRVDVLIVELIRNGIFYPQAYVRQLIISGITDKNDTMLDVERKRRHHRTLKQLPGSSLFDILEETRTAEEQQLYEMMSTYSSERRLVLSELSCGPSFYASSRGEHTSSSGIRKQNDHTVASGGDKHGRVPEQVEDVKALVSSLLSFTYPHPVESEPCQIKTSFQESSTSTLSQVEIGEAKNGCEDCMRSKGQKLDDGATPFQGFPLIQSDEEDIWWVRKGTKLHESFNVEPAQKSVKQTSRGRAKVVRKTQSLAQLAAARIEGSQGASTSHVCESKMSCPHHKPNNDGDNVKDFDHTRTTNLTEVGKSLKRLRLIERRSVSLWLLKSIRQLVEGNEMTASKTTNSISTLSLQPDDKSVSKWRLGDEELLSVLYVLDTCCDLVSGARFLVWLLAKIRGGLGSSGQPGRSSMHMRNREHQVCQVSEALVFSSLLRYENILLATDILPDFLSASVNRNSVSATARHPGSAAFAYVRYFLKKYRDVASVARWEKNFRTTCDQRLLAELDNGRSIDGDLVSSSGISAGDEIDEQVRQKLNGRSSRLLQNMKEIVQRQADEVQRSLKEKKVLAAPKSPPSFEKEDSYQISHDIVLGLVECIRQNGGANPDGDLSIVASAVSAVVVNAGHVIAKHLDFAGGNYQGVNSVSNSLNFVRHTLRIHINSLCLLKESLGDRFSRVFEIALAVEASAAVTAAFAPAKIHRNQFQPSPETHDAYGNNTSDLGNSGKGFVGRTAKVAAAVSALVVGAIVHGAVSLERMVAALKVKDGLDILQLLRGLKTSTNGVSRPTGTFRMENSTEVSAHWFRILLGNCRTVYDGLIADILGESYILALSRLQQTLPLSVIFPPAYSMFAMVLWRRYIFNREDPQLYQSLSNAINDITRHQPFREICFRNTHQLYNLLASDVGDSEFAAMLESHTPDRNSKILPFIPLRARLFLDALIDCNTPTTTQGDGASEPCDPKDNELKLSERLMQLLDTLQPAKFHWQWVEMRLLLDEQALMEKVAAGKTALESLRSLSPNAEGFALSDSEKGFTEVILSRLIARPDAAPLYSEVVHLLGKLQESLVMDVKWILQGQDAILGRRSTRQQLVHIAQRKGLPTKAQVWKPWGWSSLLSDVIANKTAKRKLEVTSIEEGEVVDDTVDAKRPSKTSSHSVDRSVEGTRSINKYLTEKALAELVLPCIDRSSADIRGILSGDLIKQMGAISEHIKAISRNGAKQAGSVPSGNEMPSSKSSGRKGIRGGSPNIGRRTPVGNDPSPPSASALRAALWLRLQFIIRLLPVIMADRSMRHTLASAILGLLATRMIYEDADLPLPPTNATALRREVDSLLEPPLDVLLDRPGESLFERLLCVLHALLGSCKPSWLKSRSASKSTIRTQRDFSAFDNEAAEGLQSALDHMELPETIRRRIQAAMPILPPSRHPSIQCQPSQLSLAALTPLQSCTSSAGPQQKSSCVSWVPTNVSSRSKAVLPSHDPEMEVDPWALLEDGTSCPFTSSGSNGTSGVTGDHANLKACSWLKGTVRVRRTELTYIGSLDDDS
Length2207
PositionKinase
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.304
Instability index48.84
Isoelectric point8.65
Molecular weight243654.42
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20257
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     180.91|      48|      48|     963|    1010|       1
---------------------------------------------------------------------------
  904-  939 (30.39/15.39)	..............NVEPAQKSVKqtsRGRAkVVRKTQS.LAQLAAAR..IEG
  963- 1010 (77.58/52.50)	DGDNVKDFDHTRTTNLTEVGKSLK...RLRL.IERRSVS.LWLLKSIRQLVEG
 1012- 1060 (72.94/48.86)	EMTASKTTNSISTLSLQPDDKSVS...KWRL.GDEELLSvLYVLDTCCDLVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.70|      33|      49|     342|     374|       2
---------------------------------------------------------------------------
  342-  374 (55.35/45.25)	ERDSVD..VLELLLPIVLGLVDT.ITLSQTYVRMFV
  391-  426 (48.35/38.24)	KRPSVSsvIAELLRYMVLAVPDTfVSLDCFPLPSFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.04|      25|      26|    1879|    1903|       3
---------------------------------------------------------------------------
 1852- 1876 (24.01/11.39)	..IDRSSADIRG..ILSGDlikQ.MGAISE
 1879- 1903 (43.81/28.30)	KAISRNGAKQAG.SVPSGN...E.MPSSKS
 1907- 1932 (34.22/20.11)	KGI.RGGSPNIGrRTPVGN...DpSPPSAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.08|      27|      51|    2087|    2113|       4
---------------------------------------------------------------------------
 2087- 2113 (49.40/32.10)	PSRHPSIQCQP.SQLSLAALTPLQSCTS
 2140- 2167 (45.68/29.01)	PSHDPEMEVDPwALLEDGTSCPFTSSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.45|      18|      19|      54|      72|       5
---------------------------------------------------------------------------
   54-   72 (30.56/22.78)	CDKEPLNNKLGPPDfYPQT
   75-   92 (31.89/18.36)	CPEETLTKEYAQAG.YKET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.14|      25|      54|     106|     132|       6
---------------------------------------------------------------------------
  106-  132 (41.25/39.16)	QIPhfCKPDVVVKCKEAL...KKRLRAINE
  162-  189 (41.89/30.64)	QRP..CNEDTRRKWAEALaqpNKRLRSLSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.38|      17|      19|    1695|    1711|       8
---------------------------------------------------------------------------
 1695- 1711 (27.38/14.29)	ALSDSEKGFTEVI..LSRL
 1713- 1731 (24.00/11.67)	ARPDAAPLYSEVVhlLGKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.87|      14|      19|    1263|    1276|      11
---------------------------------------------------------------------------
 1263- 1276 (24.71/17.42)	IVLGLVECIRQNGG
 1285- 1298 (21.17/13.76)	IVASAVSAVVVNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.74|      21|      27|    1530|    1550|      12
---------------------------------------------------------------------------
 1530- 1550 (38.24/23.89)	RYIFNREDPQLYQSLSNAIND
 1558- 1578 (38.50/24.09)	REICFRNTHQLYNLLASDVGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.37|      25|      54|    1339|    1366|      13
---------------------------------------------------------------------------
 1339- 1366 (32.43/30.30)	LKESlGDRF.SRVFEIALAVeaSAAVTAA
 1394- 1419 (37.93/23.43)	LGNS.GKGFvGRTAKVAAAV..SALVVGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.48|      12|      19|     469|     481|      15
---------------------------------------------------------------------------
  469-  481 (15.47/16.51)	RASDLATVANpNL
  491-  502 (20.01/13.69)	QALDKALVTG.NL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.87|      13|      56|    1605|    1627|      17
---------------------------------------------------------------------------
 1583- 1595 (23.86/14.62)	AMLESHTP.....DRNSK
 1610- 1627 (18.00/16.05)	ALIDCNTPtttqgDGASE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20257 with Med12 domain of Kingdom Viridiplantae
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