<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20256

Description Uncharacterized protein
SequenceMAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQSDIKLWPFKVAPGSADKPMIGVKFRGEEKQFSAEEISSMILNKMKETAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKSSSDGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKNKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPRVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILTGEGNEKVQDLLLLDVSPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDMDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVDAKNSLENYAYNMRNTIRDDKIASKLPEAEKKKIDDAIEGAITWLDNNQLAEVDEFEDKMKELEGICNPIIAKMYQGAAGPDMAGGMAEDAPAAGGSSGAGPKIEEVD
Length650
PositionUnknown
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.429
Instability index35.49
Isoelectric point5.14
Molecular weight71123.66
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20256
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     612.85|     215|     239|     143|     380|       1
---------------------------------------------------------------------------
  140-  377 (309.93/269.99)	GSTVKNAVVTVPAyfNDS.QRQATKDAGVIS.GLN....VMRIINePTAAAIAYGLDK..KSSSDGEKNVLIFDLGGG...TFDVSLLtieeGIFEVK....ATAGDTHLG.GEDFD.NRLVNhFVQEFK...RKNKKDITGNpraLRRLRTacERAKRTLSSTAQTTIEIDSLYEGIDfyttiTRARFEEL..NM.DLFRKcmEPVEKCLRDAkmDKSSVHDVVlVGGSTRIPRVQQLLQDFFNG..KELCKSINPDEAVAY
  378-  617 (302.92/199.35)	GAAVQAAILTGEG..NEKvQDLLLLDVSPLSlGLEtaggVMTVLI.PRNTTIPTKKEQvfSTYSDNQPGVLIQVYEGErarTKDNNLL....GKFELSgippAPRGVPQITvCFDMDaNGILN.VSAEDKttgQKNKITITND...KGRLSK..EEIEKMVQEAEKYKAEDEEHKKKVD.....AKNSLENYayNMrNTIRD..DKIASKLPEA..EKKKIDDAI.EGAITWLDNNQLAEVDEFEDkmKELEGICNPIIAKMY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.92|      18|      21|      38|      55|       2
---------------------------------------------------------------------------
   16-   33 (19.08/10.54)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.55/23.06)	NR..TTPSYVAFTDSER..LIG
   60-   78 (24.29/15.39)	NQvaMNPINTVF.DAKR..LIG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20256 with Med37 domain of Kingdom Viridiplantae
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