<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20254

Description Uncharacterized protein
SequenceMAPPPPPTSPPSLDYWRGFFSGARASIFDAIDAAIRVAAADHPDALRARRDAIAERLYTALIALPLPEAPWLPTTGQPAPSLCSSDRAEVVNDDGGAARRNNSDDAVIAEAFRVKAALSNAQEKSEAELLELLQRLHQLEFTVEAIMATEIGKAVKPLRKHASKQIRQLVRSLIEGWKAMVNEWVNDGGGPVVDHTPQSVDASCLDQEEGGLPSPPMDEAALFATPCTSIQLSEFFDEMDDDGNIRSDAKEHRQCNKPNQESIKKKSPMGQWYDPEQNWRLDPSSMKQSRPNEPFNWQTRQQSNPGAQGKPSSAAFGPGRPQMMHLETKGSEMRPKQQEQDVSVAQRRPKPTMPKPSPKHDENSVRAKLELAKEAKLEATKRKLQEGYQEFNNAKKQRTVQMVDPQDLPKQGNPNPALNGKARNNNNNIRNRLGIRR
Length437
PositionUnknown
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.05
Grand average of hydropathy-0.862
Instability index59.79
Isoelectric point8.22
Molecular weight48527.98
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20254
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     245.01|      79|     100|     216|     314|       1
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  216-  303 (139.38/70.63)	PMDEAALFATPCTsiqlseffdEM.....DDDGNI...RSDAKEHRQCNKPNQESIKKKSPMGQWYDPEQNWR....................LDPSSM.KQSRPNEPFNWQTRQQS
  319-  426 (105.62/54.68)	GRPQMMHLETKGS.........EMrpkqqEQDVSVaqrRPKPTMPKPSPKHDENSVRAKLELAKEAKLEATKRklqegyqefnnakkqrtvqmVDPQDLpKQGNPNPALNGKARNNN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     193.84|      63|     112|      29|      96|       2
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   29-   96 (93.35/67.93)	DAIdAAIRVAAADHPdaLRARRDAIAERLYTALI.ALPLPEAPWLPTTGQP....APSlcSSDRAEVVNDDGG
  144-  211 (100.50/57.04)	EAI.MATEIGKAVKP..LRKHASKQIRQLVRSLIeGWKAMVNEWVNDGGGPvvdhTPQ..SVDASCLDQEEGG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20254 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SEFFDEMDDDGNIRSDAKEHRQCNKPNQESIKKKSPMGQWYDPEQNWRLDPSSMKQSRPNEPFNWQTRQQSNPGAQGKPSSAAFGPGRPQMMHLETKGSEMRPKQQEQDVSVAQRRPKPTMPKPSPKHDENSVRAKLELAKEAKLEATKRKLQEGYQEFNNAKKQRTVQMVDPQDLPKQGNPNPALNGKARNNNNNIRNRLGIRR
2) VNDGGGPVVDHTPQSVDASCLDQEEGGLPSPPMDEAALFA
233
185
437
224










Molecular Recognition Features






MoRF SequenceStartStop




1) PSLDYWRGFFS
11
21