<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20249

Description Uncharacterized protein
SequenceMDAWEAASARNGGAGSFSSSTGGAPTAEIFEDQAAGGEEDEGEGEGEEKVFVAVPEQHKSGRSLLAWALRHVAAVDGAAVVVAHVHAPAQMIPMMGSKFHASKLRPEQVSAYRQYEREKVEKHLDEYIHQCSKMKVKCEKLVIENNDVAKGIMELVSLHGVSKLIMGAASDKHYSRKMKMPKSKTALAVLQKADTSCKIWFVCKEHLICTRDARVPASRDAATPPATRSSMSTSFERGGQPNGYVNNAVDGHVQRSMSEKVVPASVRTSLRLPSRLSVRTTFSRRSIEDKSANSWDSVPIRSFPSSHQASSTVTDEGFSDSSSFSTPRHDATEILPSVHAGCDLQNPALYREQAEKHQKQAFDESVRRQMAEEEPILFRRKADNFEDTSLNEAKQRKDVKEALAKANSVIESMKQEIDALKQDRDDIIDKLVKMREQKATLEQRVDEYGGIVKTLEDKLAASKSLIHSQQLEYEKLKHERDNALKDVDELHKEIGKTVSCPSLTWNTEFSLSELQLATQNFSDTMKVGEGGFGRVYRGSLRNTTVAIKMLRTHNLQGQSQFRQEVVVLSRVRHPNLVMLMGSCSEASGLVYEFLPNGSLEDRLACENNTPPLTWQVRTRIIGEICSALVFLHSTEPHPVIHGDLKPANILLDANFVSKLSDFGISCLLVKSSTMSTSLYQTTNPRGTFAYMDPEFLTTGELTARSDIYSLGIVILQLVTGKPALGIGRAVEDALEKDESELLVDQSAGEWPFVQAKKLMLLGLQCAELSRRRRPYCMSDVWCVIEPLVKSASLSATPQSFGHQSVESHTPSCFLCPISQEVMRNPHIAADGYTYEAEVIKGWLHSGHSTSPMTKLPLAHHHLMPNHALHSAIKEHFKKQRPS
Length882
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.426
Instability index49.79
Isoelectric point6.74
Molecular weight97768.84
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20249
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     126.41|      51|     278|     450|     505|       1
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  116-  141 (24.14/ 9.76)	EREKVEKHLDEYIHQCSKmKVKCEKL.........................................................................................................................................................................................................................................................................................
  397-  422 (26.54/11.62)	..........................vienndvakgimelvslhgvsklimgaasdkhysrkmkmpksktalavlqkadtsckiwfvckehlictrdarvpasrdaatppatrssmstsferggqpngyvnnavdghvqrsmsekvvpasvrtslrlpsrlsvrttfsrrsiedksanswdsvpirsfpsshqasstvtdegfsdsssfstprhdateilpsvhagcdlqnpalyreqaekhqkqafdesvrrqmaeeepilfrrkadnfedtslneakqrKDVKEALAKANSVIESMKQEIDALKQ
  423-  478 (47.00/34.38)	DRDDI...IDKLVK........................................................................................................................................................................................................................................................mreqkatleqrvdeyggivKTLEDKLAASKSLIHSQQLEYEKLKH
  479-  503 (28.72/18.19)	ERDNALKDVDELHKEIGK.TVSCPSL.........................................................................................................................................................................................................................................................................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     321.62|     101|     483|     239|     343|       2
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  239-  343 (167.75/132.63)	GQPNGYVNNAVDGHVQRSMSEKVVPASVRTSLRLPSR....LSVR.TTFSRRSIEDKSANSWDSVPirsfPSSHQASSTVTDEGFSDSSSFS.TPR....HDATEILPSVHAGCD
  720-  830 (153.87/111.53)	GKPALGIGRAVEDALEKDESELLVDQSAGEWPFVQAKklmlLGLQcAELSRRRRPYCMSDVWCVIE....PLVKSASLSATPQSFGHQSVEShTPScflcPISQEVMRNPHIAAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.76|      24|     483|      80|     104|       3
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   80-  104 (40.53/32.78)	VVVAHVHAPaQMIPMMGSKFHASKL
  566-  589 (43.22/29.98)	VVLSRVRHP.NLVMLMGSCSEASGL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20249 with Med32 domain of Kingdom Viridiplantae
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