<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20246

Description Uncharacterized protein
SequenceMDAWEAASARNGGAGSFSSSTGGAPTAEIFEDQAAGGEEDEGEGEGEEKVFVAVPEQHKSGRSLLAWALRHVAAVDGAAVVVAHVHAPAQMIPMSTCSRSASSLLARHRTLTAGPGSRAEERVGSKFHASKLRPEQVSAYRQYEREKVEKHLDEYIHQCSKMKVKCEKLVIENNDVAKGIMELVSLHGVSKLIMGAASDKHYSRKMKMPKSKTALAVLQKADTSCKIWFVCKEHLICTRDARVPASRDAATPPATRSSMSTSFERGGQPNGYVNNAVDGHVQRSMSEKVVPASVRTSLRLPSRLSVRTTFSRRSIEDKSANSWDSVPIRSFPSSHQASSTVTDEGFSDSSSFSTPRHDATEILPSVHAGCDLQNPALYREQAEKHQKQAFDESVRRQMAEEEPILFRRKADNFEDTSLNEAKQRKDVKEALAKANSVIESMKQEIDALKQDRDDIIDKLVKMREQKATLEQRVDEYGGIVKTLEDKLAASKSLIHSQQLEYEKLKHERDNALKDVDELHKEIGKTVSCPSLTWNTEFSLSELQLATQNFSDTMKVGEGGFGRVYRGSLRNTTVAIKMLRTHNLQGQSQFRQEVVVLSRVRHPNLVMLMGSCSEASGLVYEFLPNGSLEDRLACENNTPPLTWQVRTRIIGEICSALVFLHSTEPHPVIHGDLKPANILLDANFVSKLSDFGISCLLVKSSTMSTSLYQTTNPRGTFAYMDPEFLTTGELTARSDIYSLGIVILQLVTGKPALGIGRAVEDALEKDESELLVDQSAGEWPFVQAKKLMLLGLQCAELSRRRRPYCMSDVWCVIEPLVKSASLSATPQSFGHQSVESHTPSCFLCPISQEVMRNPHIAADGYTYEAEVIKGWLHSGHSTSPMTKLPLAHHHLMPNHALHSAIKEHFKKQRPS
Length910
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.434
Instability index50.68
Isoelectric point7.07
Molecular weight100676.99
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20246
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.41|      37|     511|      80|     122|       1
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   80-  122 (52.06/53.61)	VVVAHVHAPAQMIPMSTCSRsASSLLarHRTLtagPGSRAEER
  594-  630 (66.35/45.14)	VVLSRVRHPNLVMLMGSCSE.ASGLV..YEFL...PNGSLEDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.17|      40|     360|     125|     169|       2
---------------------------------------------------------------------------
  125-  169 (60.18/54.18)	SKFHASKLRPEQVsayrQYEREKVEKHLDEYIHQCSKmKVKCEKL
  492-  531 (67.99/44.93)	SLIHSQQLEYEKL....KHERDNALKDVDELHKEIGK.TVSCPSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.19|      32|     243|       2|      37|       3
---------------------------------------------------------------------------
    2-   37 (47.07/40.33)	DAWEAASARNGGAGSFssSTGGAPTAEIfeDQAAGG
  248-  279 (58.12/35.98)	DAATPPATRSSMSTSF..ERGGQPNGYV..NNAVDG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20246 with Med32 domain of Kingdom Viridiplantae
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