<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20244

Description Uncharacterized protein
SequenceMATQEEAVVPESSLSSDPPITIGLAVSSSKSSKYAVKWALKNFSARERTRFMLIHVRQKVTLVPTPMGNYVPVDQVRDDIASAYEKEVECEAQNMLLMYKNMCNGKVEAEILVVKGDDVAETISGVVSACQIHKLVVGVSSQGNFMRKSKGTRTSSRICKSVPSFCMVYAVSKSGLSMVYSPGSEGNNSYEIFQVNESSNSELYSDDKSSVSDITPSRISGSNLPGGNLDSSSSAEHNRPRSLQEYLTGSTLAAIVDKDQSGSPRGADQITESSNLRISEKSPTVSRALQELMRSEDKASTLCAGHISAPTNLPVSAKAASVKSALQELMLSEDKANTPCASDQISGSSNLPITDKATTVSNALQELMLSEDKDNVNFEREKLKIKLGHMRGVCKLVEDESTSASQQMIDLIEKRAQEEARLVEVHSRINTAIEAARKEREQRYAAEVQARHVRDLANEEALKKQHVQLTASREADDMQKLEKLLELGGKPYILFTWEEMESATSSFSEALKIGSGANGTVYKGKIHQTTVAIKLLKSDDSRVTKHFKQELEVLSKTRHRHLLLLLGACLDRACLVYEYMENGSLEDRLQCKGGTSPLPWYYRFRIAWEIALALIYLHSSRPKPIIHRDLKPANILLDSNFTSKIGDAGIATLLPLSEASSTHTIRKHTDLVGTLFYMDPEYQRSGQVSAKSDVYALGMVFLQLLTAKSPMGLADTVERAVEERRLVDILDQRAGKWPVKAAYELAQLGLSCLEMRGKNRPDLKSNVLVVLERLNKIASTARDSVRPVPTGPPSHFICPILKRVMQDPCIASDGYSYERVAIEMWLHENDVSPLTKTQLPDKNLVPNHALLCAINSWKGEAGTGGITG
Length868
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.05
Grand average of hydropathy-0.336
Instability index40.94
Isoelectric point7.03
Molecular weight95513.75
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20244
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     219.03|      35|      36|     301|     335|       1
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  223-  260 (40.96/26.45)	NLPGG.NLdsssSAEHNRPRSLQEYLTGSTLAA.IVDKDQ
  264-  298 (58.34/41.17)	PRGAD.QI....TESSNLRISEKSPTVSRALQELMRSEDK
  301-  335 (61.60/43.93)	TLCAG.HI....SAPTNLPVSAKAASVKSALQELMLSEDK
  338-  373 (58.13/41.00)	TPCASdQI....SGSSNLPITDKATTVSNALQELMLSEDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.05|      19|      38|     416|     435|       2
---------------------------------------------------------------------------
  416-  435 (26.20/21.18)	AQEEArLVEVHSRINTAIEA
  457-  475 (30.84/19.77)	ANEEA.LKKQHVQLTASREA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.96|      16|      38|     115|     130|       3
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  115-  130 (27.43/14.62)	KGDDVAETI.SGVVSAC
  150-  166 (24.53/12.43)	KGTRTSSRIcKSVPSFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.45|      56|      78|     484|     542|       4
---------------------------------------------------------------------------
  484-  542 (85.56/71.16)	LLELGG.KPYILFTWEEMESatSSFSEALKIGSGANGT..VYKGKIHQtTVAIKLLKSDDSR
  563-  621 (88.89/62.66)	LLLLGAcLDRACLVYEYMEN..GSLEDRLQCKGGTSPLpwYYRFRIAW.EIALALIYLHSSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.53|      30|     724|      57|      86|       5
---------------------------------------------------------------------------
   57-   86 (55.87/37.07)	RQKVTLVPT.PMGNYV.PV.DQVRDD..IAS...AYEK
  782-  819 (34.66/20.36)	RDSVRPVPTgPPSHFIcPIlKRVMQDpcIASdgySYER
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20244 with Med32 domain of Kingdom Viridiplantae
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