<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20238

Description Uncharacterized protein
SequenceMAPNPPGSIQLPFSVPRPSNIPFGASAQQGNLDTNTLKSDAPSVPMVSPHTMQLPTGLPSNSPSTITSASGSSSIPIQMPTLSLPPRPEVFGSGRLSVPGQPSPIFSNPTSLPGRPIVPSAASLPQAAPSSIANPGVIPQNSQPPFYPSYPGHGIVPPQPLWGHPHPPQPTGAQQPPFQSYPGPVGSLGKPMVGASAATMAFANAQPSGVSTGGDRKEQASTNPGSEQPTLASAEPDSTGHGGQVNEQLEDKRNTGVQDSDAWSAHKTETGVVYYYNALTGESTYQRPPGYKGEPEKVATQPVPVSWDKLAGTDWSIVSTSDGKKYYYDNKQKVSSWQLPPEVAELLKNAESGPTSLQDAATIENKGVINIDASTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGASSVPSPLATSSSAASELNGSKPADAALKGQQVSNNGEKSKDNNGDANMSDSSSESDDEERGPSKEDCIRQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSHSTRRAIFDHYVRTRAEEERKEKRAAQKAAVEAYKELLEEASEDINKKTAYQDFKRKWGADSRFEALDRKEREALFNEKVKAIQEKVQSMRKAVIADFKSMLRESKDITSVSRWTKVKENFRSDPRYKATKHEERETIFNEYIAELKSAEQEAEQAAKAKVDEHAKLKERERETRKRKEREEQEMERVKMKIRRKEAVSSYQALLVEMIKDPKVSWTESKPKLEKDPQGRALNPDLGQGDAEKLFRDHVKDLYERCVRDFRALLSEVITPEVAARTTDAGKTAINSWSEAKCLLRSDPRYNKLASKDRESIWRRYADDLTRKLKQSDTKEKDKSDTDGKPRRSSDTKEEKSDTDGKQHRSSDPPRRR
Length883
PositionUnknown
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.926
Instability index49.84
Isoelectric point8.87
Molecular weight97226.29
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20238
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.32|      13|      15|     842|     855|       1
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  842-  855 (22.09/15.69)	SDTKEkDKSDTDGK
  860-  872 (26.24/14.20)	SDTKE.EKSDTDGK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     154.88|      18|      20|      26|      43|       2
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    2-   16 (21.83/ 6.43)	APN....PPGSIQLP.FSV.P..
   41-   61 (26.83/ 9.44)	APSvpmvSPHTMQLPT.GL.PSN
   87-  104 (24.99/ 8.33)	RPE....VFGSGRLSVPGQ.PSP
  128-  146 (25.74/ 8.78)	APS...sIANPGVIPQNSQ.PPF
  147-  160 (27.44/ 9.81)	YPS....YPGHGIVP.....PQP
  161-  178 (28.05/10.17)	LWG....HPHPPQ.PTGAQqPPF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     325.27|      44|      47|     611|     654|       3
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  480-  523 (59.63/37.42)	IRQFKEMLKE...........RGV..A..PFSKWEKELPKIVFDPRFKAiPSHS....TRRA...................I
  547-  610 (45.68/26.63)	VEAYKELLEE........aS.EDI..N..KKTAYQDFKRKWGADSRFEA.LDRK....EREAlfnekvkaiqekvqsmrkaV
  611-  654 (71.87/46.88)	IADFKSMLRE.........S.KDI..T..SVSRWTKVKENFRSDPRYKA.TKHE....ERET...................I
  659-  704 (45.57/26.55)	IAELKSAEQE.........A.EQA..AkaKVDEHAKLKERERETRKRKE.REEQ....EMER...................V
  714-  760 (51.11/30.83)	VSSYQALLVE.........MiKD...P..KVS.WTESKPKLEKDPQGRA.LNPDlgqgDAEK...................L
  773-  827 (51.41/31.06)	VRDFRALLSEvitpevaarT.TDAgkT..AINSWSEAKCLLRSDPRYNK.LASK....DRES...................I
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     113.09|      27|      28|     199|     225|       4
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  211-  239 (34.29/15.51)	S...TGGDRKEQ..ASTNPG.....seqpTL..ASAEPDST
  240-  272 (32.87/14.58)	G...HGGQVNEQleDKRNTG.....vqdsDAWSAHKTETGV
  278-  305 (25.45/ 9.74)	A...LTGESTYQ....RPPGykgepekvaT......QPVPV
  306-  332 (20.48/ 6.49)	SwdkLAGTDWSI..VSTSDG........kKYYYDNKQ....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.52|      23|      27|     378|     402|       5
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  378-  402 (35.14/27.70)	IQTGGRDSLPlrQTVAPASPSALDL
  407-  429 (37.37/22.70)	LQDAGASSVP..SPLATSSSAASEL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.07|      22|      73|     106|     127|      10
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  106-  127 (40.79/20.22)	FSNPTSLPGRPIVP.SAASLPQA
  181-  203 (36.29/17.23)	YPGPVGSLGKPMVGaSAATMAFA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20238 with Med35 domain of Kingdom Viridiplantae
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