<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20237

Description Uncharacterized protein
SequenceMTSSAPPNPSPVPVPVPVPVSTPTPTPNGTASPPKDQPPPQQQLQAGGQEELAPADGGGAEAAEAGVVAGVAGEAMEVDGGPGSGDAEAGGVVGVGGGGGAGGGGQQASPATVFRIRLKQSPASLRHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPNKGPVNLVRDASSWQCEHEWRQDLSVVTKWLSGVSPYRWLPASSTSSNLKTFEEKFLTQQPQSSAGWPSILCVCSVFSSGSVQLHWSQWPSQNSAQPRWFSTSKGLLGAGPSGIMAADAIVTESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSSVPPSLNPPSWPGFAPLAAYLFSLQDYLVSEGAQTKKQTENETTEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSRQPVVLHPIFGSPTSFGGQPPMQIFWSTRVNKSIPPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPDFDQVDSYHVNVGSAIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILSTQTKVNSAAWERAIADRFWWSLLAGVDWWDAVGCTQSAAEDGIVSLNSVIAFLDADFHSLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSDMLSSIEPDKMTVEPALLPNIQGYVDAVLDLASHFITRLRRYASFCRTLASHVGPSSTTGTSRNMVTSPTNSSPTPSNNQGNQGGATSAPGNSQMQEWVQGAIAKISNNSDGAATTTPNPMSGRSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQKNQDSAIQKIQHMMNAKTEDSSTTVRSGLGAAKVEDGQAMRGGQFALGAKGPEENPIGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSTLPHPLPASQVGSNNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPAEEWHRRNMFGGPWSEPDDFGPLDNMPHQKVSGSINPHLSDMEEDYGNSLGVQSLWPRKRRLSERDAAFGLKTSVGLGGYLGVMGSRRDVVTAVWRTGLDGEWYKCIRCLRQTCAFAQPGAPNPTNEREAWWISRWSHACPMCGGSWVKVV
Length1294
PositionTail
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.07
Grand average of hydropathy-0.240
Instability index52.52
Isoelectric point6.26
Molecular weight138978.31
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20237
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.06|      18|      21|      56|      73|       1
---------------------------------------------------------------------------
   56-   73 (33.77/16.70)	DGG.GAEAAEAGVVAGVAG
   79-   97 (30.29/14.24)	DGGpGSGDAEAGGVVGVGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.52|      18|      19|     862|     879|       2
---------------------------------------------------------------------------
  862-  879 (32.21/14.99)	PSSTTGTSRNMVTSPTNS
  883-  900 (33.31/15.74)	PSNNQGNQGGATSAPGNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     483.24|     156|     362|     161|     353|       3
---------------------------------------------------------------------------
  161-  347 (261.41/179.41)	PSS.NSSPP...FW.......IPI..HILNPER....PT........ECSV.......FNvKADSPRDFVQFIEWSPRSCPRALLVANFHGRITIWTQPNKGPVNlvrdasswqcehewrqdlSVVTKWLSGVSPyrwlPA.SSTSSNLKTFEEKFLTQQpqssagwpSILCVCSVFS....SGSVQLHWSQWPSQNSAQPRWFSTSKGLLG......AGPSGIMAADAI
  390-  422 ( 0.50/14.51)	.................................................................................................................................................................................S....SVPPSLNPPSWPGFAPLAAYLFSLQDYLVS......EG..........
  528-  722 (221.34/107.26)	PTSfGGQPPmqiFWstrvnksIPPteDLKNPQTyvpmPTtsdersssECSVdranrlsFD.PYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPDFDQVD..................SYHVNVGSAIAP....PAfSSSSCCLASVWHDTLKDR........TILKIIRVLPpailSTQTKVNSAAW.ERAIADRFWWSL...LAGvdwwdaVGCTQSAAEDGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.50|      10|      18|     793|     802|       6
---------------------------------------------------------------------------
  793-  802 (18.72/10.73)	INPSTLLPEP
  813-  822 (18.78/10.80)	IEPDKMTVEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.81|      32|     359|     723|     784|       7
---------------------------------------------------------------------------
  723-  754 (57.52/77.45)	VSLNSVI...AFLDADFHSLPTMQQRQ..QHCPNLDR
 1088- 1124 (48.29/17.08)	VGSNNIIirlHYIDGNYTVLPEVVEASlgPHMQNMPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      13|     113|     841|     853|      11
---------------------------------------------------------------------------
  841-  853 (26.05/18.16)	HFITRLRRYASFC
  957-  969 (26.85/18.94)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.20|      12|      22|     913|     925|      12
---------------------------------------------------------------------------
  913-  925 (17.46/11.25)	ISNNSdGAATTTP
  937-  948 (23.74/11.15)	ISINT.GTFPGTP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20237 with Med16 domain of Kingdom Viridiplantae
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