<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20235

Description Uncharacterized protein
SequenceMDHHHPQQPQQYGDPYRGLVPSPQPDHHLHALQYHHQPQPALMSPPQPQPQPGLMSPPQPQPQPGLMSPPQPQQHHHASLASHFHLLHLVTRLADTIGTGTRDQNFDALVEELTSQFARCQQLLNSISGTISSKSTTVEGQRQSLDETRQLLDQRKELITKYRSSVEDLLKGDTR
Length175
PositionMiddle
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.04
Grand average of hydropathy-0.935
Instability index68.33
Isoelectric point6.51
Molecular weight19728.78
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20235
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.04|      21|      22|      29|      49|       1
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    4-   35 (28.94/ 8.91)	HHPQqPqqygdpyrGLVPSPQPD..hhLHA.LQYH
   36-   59 (37.98/13.81)	HQPQ.P........ALMSPPQPQpqpgLMS..PPQ
   60-   83 (38.13/13.89)	PQPQ.P........GLMSPPQPQ..qhHHAsLASH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20235 with Med9 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDHHHPQQPQQYGDPYRGLVPSPQPDHHLHALQYHHQPQPALMSPPQPQPQPGLMSPPQPQPQPGLMSPPQPQQHHHASLASHF
1
84










Molecular Recognition Features






MoRF SequenceStartStop




1) QQYGDPYRGLVP
10
21