<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20234

Description Uncharacterized protein
SequenceMTPTKEEGPAIGIDLGTTYSCLSVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQSDIKMWPYKVIPGSGDKPMIVVQYKGEEKQFSVEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNILIFDPGGSTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDITGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGTAVQAAILSVEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVYEGERTRTRDNNLLGKFELSGTPPAPRGVPQITVCFDIDANGILNVSAEDKMTGQKNKITITNEKGRLSKEDIEKMVQDAEKYKSEDEEHKKKVEAKNSLENYAYNMRNTIQDEKIASKLPADDKKKIEDAVKQAIQWLDSNQLAEVEEFEDKMKELEGLCNPIIAKMRSPAKDLGGRHRTVRVSGQGRRKGKSHEPVAISGRARTPKPRRFQIPIPPAAGRTRRRLWL
Length663
PositionUnknown
OrganismPanicum hallii var. hallii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Panicodae> Paniceae> Panicinae> Panicum> Panicum sect. Panicum.
Aromaticity0.06
Grand average of hydropathy-0.506
Instability index41.27
Isoelectric point8.53
Molecular weight73866.43
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20234
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.26|      18|      21|      39|      56|       1
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   17-   34 (18.01/ 7.99)	....TTYSCLSVWQHDRveIIA
   39-   56 (31.98/19.05)	NR..TTPSYVAFTDSER..LIG
   61-   79 (24.27/12.94)	NQvaMNPINTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     176.02|      56|      92|     337|     394|       2
---------------------------------------------------------------------------
  337-  394 (84.51/56.67)	TVHDVVLVGGSTRiPKVQQLLQDF.FNGKELCKSINPDEAVAYGTAVQaAILSVEGNEK
  429-  485 (91.52/53.44)	TKKEQVYEGERTR.TRDNNLLGKFeLSGTPPAPRGVPQITVCFDIDAN.GILNVSAEDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.65|      14|      15|     610|     623|       3
---------------------------------------------------------------------------
  610-  623 (26.29/16.80)	GGRHRTVRVSGQGR
  626-  639 (25.35/15.96)	GKSHEPVAISGRAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     299.16|     102|     272|     229|     334|       5
---------------------------------------------------------------------------
  229-  334 (155.22/114.65)	TAGDTHLGGEDFDnRLVNHfVQEFK...RKHKKDITGN...PRALRRLRTSC..ERAKRTLSSTAQTTIEiDSLYEGIDFYSTITRARFEEL..NM.DLFRKCmEPVEKCLRDAKMD
  496-  608 (143.94/89.72)	TNEKGRLSKEDIE.KMVQD.AEKYKsedEEHKKKVEAKnslENYAYNMRNTIqdEKIASKLPADDKKKIE.DAVKQAIQWLDSNQLAEVEEFedKMkELEGLC.NPIIAKMRSPAKD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20234 with Med37 domain of Kingdom Viridiplantae
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