Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MESPETCLTNVFKIENLSRIPYTLYRNPPPSTPFSIRHAERTLRSEGHIVLGDRESNALWVFQVECFSNGAPRGHGGEGEGGEGRVEGEVQAQIAEESTEGKWKSLERRIREEWGLTESSSGVFLAASLASSTKGGGDIFSPIQLGRSTPVTPAVPTSRPGIFSPSPQDVATIDLTDDPPGEPKEDHLLPYKQFLAAVLSSISFNLSLHNGYTALNIRTLVSPSSLVPHVTESKEDKGDLLPSAPITLPGLLRPSILALEAYLTTSGTFLVTPHTHVQAALRRVSSSLSSSLDKRDVFIAPWGEWGRLVSEEGLKIGAREERWKTSVREYLQDCGILSAPSRQWEEKSILEEAIDGGRWRRVEIWVPIKDHPSEGMGMLVKILWPDTLLFLRTSEGDTDRLRSGDEGCDAFWKKVFDAPEYARFASGRLSRSLAVGVKDKRELGAEWWDIPSAVDWAEEWMDGKDDREKIVMARREEKKRQQQEQERIKREAEAEKEQQSKADEPIPEVKEDGSVKGKLKLLDEAKKDGLATGGNAGVYPTPPDGGQQQQQQQQQPQQQQQQQLPEPSSISSGSSAPNTTSNTTSATAATDMDLDWIDGVMPDAVPDPTRKQSDATGGVGLAGGTGEADLFGGDMDEDMFGGGVTEDDFAFFDNPGQLEGFGGGGDVDMGLDVDFGGGGTVDLAMESPEVTLKEDMLTLVNTPGMPTQNMDQSAEESKTAEPSASDKTEPHIQTPPLSPHRAIRLLVPEYASNPTNSSQHLTPPTTVSAMKTPQKNGGLAPLSGGVNEAKRRMSLYSPITFTTKVEMADRKYAPGGRFFLPESIKEKEQKELEKEQNITTIGLKRKRGGSMFMRSMVVEEATAPEMAEVVLGDEDAVMDDSDGATGEGDDESELYSGDETSSESDADDETDEEEEEPGGGAYYTSPVAVAYGGGIARRKRKRAYEDEDQEMELAPPIPDPTKRDVGVGADEEVGVSGELAPPPWEVMVPDLTESDLVGIFSNISLETEAISLAGLGDNEFATVSRLVRDQIVYGTTKPLGDLMEMTSVETTGEDDDEEWCAIRQRRGKDEGVVEDAVKSLFGKTGVARCTLETYVAIADAVIEPPPLLGRAAAMRPMPQSRRGGIASALAKRPEVEVNTAVFKLPPPHVHIHRAESALEILPPALHFWETFGFGPCSGAKNVIAFCLHPDSRLMEEAADAFLERVSGAYESGRYGVHIRAKLDGVVENGGYGVKGRDIKAVIEAMEDFGSVLANVADEGCNIVVYVVNPFEHPSTLVDICVGFSKLKKVYESRLGGIKGNNLVLQVVRAGFLARKMGAVGTAQAEWARLAAEVYNRCVPSDGVSSLEEAQKIFSPSIYLSRPPPKSIEFKLTTEPSPALLLENSVLHIAYSQSLDERWVSVAWTDNWGTIQSTELYSLGRKNTTILRPFDEVCRDIWNKTLEITSTRKVHWRLVLIKVGEPLQDEINTWTTLASTTTHSLAILSADLNPPVYLIPSLPAPIPTAFNHQVSVYTTPPVTTPTPGSIVSPDQFGNAANTPSADPTPDLDPDSYLVDVCDETWGVILPHRRRLPPDYASGAMAYLIKRGGINDGDELRVLKIELIVAENRGGTIPLLKEVLGWYRDLACLALWKGVVGDGKGNGAPWHLAVAWKAVEGVGWVM |
Length | 1660 |
Position | Kinase |
Organism | Tuber borchii (White truffle) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Pezizomycetes> Pezizales> Tuberaceae> Tuber. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.414 |
Instability index | 51.01 |
Isoelectric point | 4.77 |
Molecular weight | 180715.59 |
Publications |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP20231 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 70.11| 20| 28| 872| 891| 2 --------------------------------------------------------------------------- 872- 891 (35.97/20.44) GDEDAVMDDSDGATGEGDDE 897- 916 (34.14/18.99) GDETSSESDADDETDEEEEE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 75.86| 20| 28| 626| 647| 3 --------------------------------------------------------------------------- 626- 645 (41.46/22.36) GEADLFGGDMDEDM.....FGGGVT 656- 680 (34.41/12.38) GQLEGFGGGGDVDMgldvdFGGGGT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 96.38| 29| 30| 702| 731| 5 --------------------------------------------------------------------------- 702- 730 (49.65/31.17) TPGM.PTQNMDQSAEESKTAEPSASDKTEP 734- 763 (46.72/23.85) TPPLsPHRAIRLLVPEYASNPTNSSQHLTP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 89.79| 28| 30| 1583| 1612| 6 --------------------------------------------------------------------------- 1583- 1612 (42.30/29.28) IKR..GGINDGDELRVLKieLIVAENRGGTIP 1614- 1643 (47.49/27.19) LKEvlGWYRDLACLALWK..GVVGDGKGNGAP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 60.52| 17| 30| 811| 827| 7 --------------------------------------------------------------------------- 811- 827 (30.51/20.81) KYAPGGRFFLPESIKEK 844- 860 (30.00/20.32) KRKRGGSMFMRSMVVEE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 39.36| 12| 15| 477| 488| 8 --------------------------------------------------------------------------- 477- 488 (19.81/13.62) EKKRQQQEQERI 495- 506 (19.55/13.34) EKEQQSKADEPI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 55.32| 16| 23| 1508| 1529| 9 --------------------------------------------------------------------------- 1512- 1529 (26.68/20.36) YTTPPVTTPTPGsiVSPD 1534- 1549 (28.64/ 7.85) AANTPSADPTPD..LDPD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 39.26| 11| 28| 577| 587| 10 --------------------------------------------------------------------------- 577- 587 (19.04/12.36) PNTTSNTTSAT 606- 616 (20.22/13.68) PDPTRKQSDAT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 34.12| 10| 29| 1437| 1447| 11 --------------------------------------------------------------------------- 1437- 1447 (14.71/13.17) WNkTLEITSTR 1469- 1478 (19.41/11.88) WT.TLASTTTH --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 176.74| 55| 939| 251| 316| 12 --------------------------------------------------------------------------- 251- 312 (81.31/70.15) LLRPSILALEAYLTTSGtflvTPHTHVQAALRRVssSLSSSLDKRDVFIApWGE.WGRLVSEE 1359- 1414 (95.43/52.57) LSRPPPKSIEFKLTTEP....SPALLLENSVLHI..AYSQSLDERWVSVA.WTDnWGTIQSTE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 60.02| 17| 31| 1177| 1193| 13 --------------------------------------------------------------------------- 1177- 1193 (30.39/21.13) SGAKNVIAFCLHPDSRL 1206- 1222 (29.64/20.40) SGAYESGRYGVHIRAKL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 97.80| 30| 31| 374| 404| 14 --------------------------------------------------------------------------- 374- 404 (48.11/35.22) EGMGMLVKILWpDTLLFLRTSEGDTDR.LRSG 406- 436 (49.69/30.96) EGCDAFWKKVF.DAPEYARFASGRLSRsLAVG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 33.66| 10| 15| 508| 517| 17 --------------------------------------------------------------------------- 508- 517 (16.88/ 6.20) EVKEDGSVKG 524- 533 (16.78/ 6.12) EAKKDGLATG --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) IPYTLY 2) LKLLD 3) RAIRLLVPEYA 4) VTEDDFAFFDNPG | 20 519 741 644 | 25 523 751 656 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab