<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20153

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMANPNDPPLDEIQWRSPQIVAQMGGLHSNTILFYFAESPFFERTSNNAVIMAQAMNNMAMYHYIQTREAFETRLKTMSGLEFIVGEEPAETGPGMGTGVWVIRKQTRRKRYQDDDEITVHASFFVVGENIYMAPTLADILASRIMTISTAIARALPAAEAARKWRPSTGHVYHLPSTQTPSQHANKPQGSKEQTPAVDDPNNNNHNKPAAASTATTTTTTTAKHDAPSLDRVAEEAFMMHLRHGGEYIDEIPITGKPGEFHLSSTGRKPVLPPQGAGAATGISAMGGPPMINTKLDDKKDGGKAEKTPKSATSPKLKRRKSKMSPSVTPAATPAPS
Length336
PositionHead
OrganismTrichoderma citrinoviride
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
Aromaticity0.06
Grand average of hydropathy-0.566
Instability index54.09
Isoelectric point9.10
Molecular weight36457.83
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20153
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.49|      18|      18|     252|     269|       1
---------------------------------------------------------------------------
  252-  269 (33.60/16.01)	PITGKPGEFHLSSTGRKP
  272-  289 (33.89/16.20)	PPQGAGAATGISAMGGPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.82|      16|      18|     141|     156|       2
---------------------------------------------------------------------------
  141-  156 (26.07/14.92)	ASRIMTISTAIARALP
  160-  175 (30.74/18.81)	AARKWRPSTGHVYHLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.02|      15|      18|     294|     308|       3
---------------------------------------------------------------------------
  294-  308 (25.38/18.88)	KLDDKKDGGKAEKTP
  315-  329 (25.64/19.15)	KLKRRKSKMSPSVTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.13|      17|      18|     214|     230|       4
---------------------------------------------------------------------------
  214-  230 (27.04/14.94)	ATTTTTTTAKHDAPSLD
  233-  249 (30.09/17.33)	AEEAFMMHLRHGGEYID
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20153 with Med6 domain of Kingdom Fungi
Unable to open file!