<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20149

Description Mediator of RNA polymerase II transcription subunit 17 (Fragment)
SequenceMSSADGPPPLSLRPFPVADQKPKNLAEFIARVNAQPGGFRAVTEAKLREDLKGSESSDGAADQDEDMSDAGPENEVAEKDPNVARMEVLKNIDIAGNTALLTLDSMSLLLSKQNPTQAGMTLSQQLRDMVGIGTLGADRLHDSNVTPAKTKDQEAVAMGWTIMEINKTRDSAEEAAAFLDKEIAAESKYWEDIVSVKKAGWSVCKVPQERHTLGVRFGFSEAAPEFKNNGLAPMRRGDNGSTDLDFGRLGGVSEALVVTYERDGKVIGRSTTRSASEDSSLESRILEARNTIFSQELWHELTKESRSLAAYDVKPEGRKLTCQADDKTKITLELLPLESCPSHDQDLPENGLAEKTSMVLHILLSYAHRYNELMRIRPVPPHISRAARQQSYALLRPVLARTMYLKNVEESTLYVGLLVKTLQKAGIPSSVVLRTAQATASDPGSRGPNQLSASQTLVRNLLQTQDFTLEVTIVPDVSFVIRARAYSFPITATYYYILLPPSSPLLALCPPWTEGYPSVRALGDYLRTAIVRVLTSHFY
Length539
PositionHead
OrganismTrichoderma citrinoviride
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
Aromaticity0.06
Grand average of hydropathy-0.330
Instability index49.86
Isoelectric point5.69
Molecular weight59205.45
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20149
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.95|      15|      16|     365|     379|       1
---------------------------------------------------------------------------
  365-  379 (28.25/16.89)	SYAHRYNELMRIRPV
  384-  398 (25.70/14.82)	SRAARQQSYALLRPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.11|      15|      15|      50|      64|       2
---------------------------------------------------------------------------
   50-   64 (24.03/13.98)	DLKGSESSDGAADQD
   66-   80 (25.08/14.89)	DMSDAGPENEVAEKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.46|      16|      16|     150|     165|       3
---------------------------------------------------------------------------
  150-  165 (28.38/18.01)	TKDQEAVAMGWTIMEI
  168-  183 (25.08/15.18)	TRDSAEEAAAFLDKEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.84|      18|     324|      10|      27|       4
---------------------------------------------------------------------------
   10-   27 (33.72/23.73)	LSLRPFPVADQK.PKN.LAE
  335-  354 (27.11/17.58)	LPLESCPSHDQDlPENgLAE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20149 with Med17 domain of Kingdom Fungi
Unable to open file!