<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20129
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLMLDNAVPVDLNDVDDLFGDGVGLSLPDRSHDRPLSLKVDDVRSRGCCQTIAWSKSGTVATITPDGQFLQLRFLRCDPADGAWDLSKPTTCELIKGSSGIPLVHLEWGSTNVPELAIIDAVGRVVIVSFSISLNHPFITRKYDTDSIDDANAVVGAHWLAVAPQNQQKSYNIMYGPATRNGNSYQYESSFVHAGGPSHPHSSKSALFCVTISGMLKMFWSQNNNRMEETTMELESVNSLDELVTHAALASDKRYLLVAVATSSKQLRLLKIEIQWGGPGSQPDKNPLPQNARLSPSLVEKHLAATTWLQTGPGDAGNDASMAELSHLHVLPSIIDNTGKSTVSPMIIAIRTRTPTSGSYQTAQTIIDRWEAVSEQRHNLHPAFEQLGNRRNSEVTEQTAYTRLRKLEPITINKVLISFQPAQFGKLLVLTMSDGTVEYRDRFTFEEVYATEDTNKVMNLRQVGWNFGEEGSCQQVAFSPTHCSMVQMSDEGKIKWCKLQYPLGDIGNSFQEVRYGATIAGLTVAAASALWHQANYDDLLAIVAPYTSKRRFIHDWITEIIKVLKIQVDYSEELHHDLLMRNTPLQSCLSFMNSLGFKGETHPRTFQGKFAMIDLNVRNVVVLITLAINTPVTVREKMSPLDEHEVVEALAGCAKWSLDLLSWLTDSLFSLMNDSEFIARLEPKRFGEVTPYLQKRNDVSLHLLLSSSSRSFLICVCRRIAHLESLSERAIEFYRGQSANMDQTGGPKMSNPKLQQAYQKMQHITTSSLVKVADFEKLLNVLGGDVRQAYQAFLPNMIKSSSQNPQGKQIDLAVKAAQVQVELSMLLAAGPPAPFLPVIKKFFSKELPAFRALCDPSKLFFANYDLLGVQDDESSLARNGSRFVYVDLFKRVEMKLGAQQWRRCTRCACVMEDVFGSRPGYSFVLGQQRKCACGGLWALLPKGKLIL |
Length | 948 |
Position | Tail |
Organism | Trichoderma harzianum CBS 226.95 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
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Aromaticity | 0.08 |
Grand average of hydropathy | -0.185 |
Instability index | 42.59 |
Isoelectric point | 6.91 |
Molecular weight | 105492.52 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP20129
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 141.96| 44| 199| 652| 718| 2
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669- 718 (62.40/88.60) LFSLMNDSEFIARlEPKRFGEVTpyLQKRNDVSLHlllSSSSRSFLICVC
867- 910 (79.56/46.20) LLGVQDDESSLAR.NGSRFVYVD..LFKRVEMKLG...AQQWRRCTRCAC
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 188.83| 65| 314| 404| 504| 4
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420- 504 (84.38/137.14) FQPAqFGKLLVLTMSdGTVEYRDrftFEevyatedtnKVMNLrqVGwnfGEEGSCQQvAFSPTHCSMVQMSDEGK.....IKWCKLQYPL
755- 824 (104.45/64.98) LQQA.YQKMQHITTS.SLVKVAD...FE.........KLLNV..LG...GDVRQAYQ.AFLPNMIKSSSQNPQGKqidlaVKAAQVQVEL
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