<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20125
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDNRISPTEALRGSIQYWNAFISKCLTKRLDAGPFEDYVKLVFAKHQLTPDIIADFFLQPQKSNCVSPDPRIPPYISVLTQLRYTDAASILRALYRYSSLHSLTSPQAQEPAKEQGQDQQQAQTQQDGETKKHRRSSSQTLWKSSSWLEEVMFYHVIRLVVEGTALKDSRTALELMHIISKWMSLFSAASNPPLGADMLAGGLQDPQVRHEMEVSRAAFVPLLLRLVDNPALVKAISHPAVKEPRKQFSESLTSFVQIFQPVPQFVEKLEMFRTEVLAPLDPIDKNNQAANAAMDDLLDSTVGLDSLVIPDLPISNTRAGLYIYLGASLVGRPLIDDHAMFSYLNNRYQGNTQQSAIDLILASFDLLANAVFRNEGPRDAHLLRSFLINKVPLILAQLCSPGFATSAEFCITEALSQVDTSVFPTASLMFDESRNNNPYTESVREEFCSACALHGLIEREHVERILGESSMGYEPSQEKYSKEKLVQSCLSDPDKIQALIRDMDKMDGNVGAVCQALVELLRQLCNSKETMSLKILCSQLVQKPQSLDVLLLFEKLPVVLEPICQLLDGWRYDEDQGEYQPVYEEFGAILLLVLAFAYRYGLSPADIGIMSPDSNVAKIISRAHISVCWDQISEQENEHLSGWIHGLFDSDAGGLGDDLMSSCPPAEFYLLIATLFENIVIAYSQGALTDDALRSGIEYLVDTFLLPSLIPAIQFLSDYLWIEQREQKSIIKILQLILLPTSISGEASTMLAAVKGIVAKPLEHSLRAYQRQDPKNQDIEPLLRALKDSLPLSRRTGAAEHQELEMWATSSSSGLSGATKHLIQALVQWCIHPEMTAMPTSYTHRQIIATLKIVGACRLLRVMLEEIRQQMLTGSGSVVYDVVTALVCAPNVSNDIPPTSVLLDEGGNIPPPLQRRLTLREVLKMEAEDYRKLHKKDAELAEIMVRLYRRVEAQMVLPPPPMLQAADMQLDLAGDAASLVGDSMAAAAGVQGDGTLSMDGVGSLDMGMGGVSSDLGLGTAGNNGGLDASAEADLFGSLDTDMDVFDGWGGMDLGGP |
Length | 1056 |
Position | Tail |
Organism | Trichoderma harzianum CBS 226.95 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.067 |
Instability index | 47.31 |
Isoelectric point | 4.87 |
Molecular weight | 116405.94 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
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GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP20125
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 101.12| 33| 36| 905| 940| 1
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908- 940 (56.41/36.50) NIPPPLQRRLTLREVLK....MEAEDYR.KLHKKDAEL
942- 979 (44.72/20.64) EIMVRLYRRVEAQMVLPpppmLQAADMQlDLAGDAASL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 73.55| 23| 36| 981| 1005| 2
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981- 1005 (37.42/27.23) GDSMAAAAGvqG.DGTLSMDGVGSLD
1016- 1039 (36.13/20.08) GLGTAGNNG..GlDASAEADLFGSLD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 108.94| 34| 36| 185| 220| 3
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185- 220 (53.75/35.00) LFSAASNPPLGADMLAGGLQDPqvRHEMEVSRAAFV
223- 256 (55.20/30.50) LLRLVDNPALVKAISHPAVKEP..RKQFSESLTSFV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 36.35| 10| 36| 653| 662| 4
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653- 662 (18.91/13.46) GGLGDDLMSS
686- 695 (17.44/11.70) GALTDDALRS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 68.50| 22| 32| 750| 773| 6
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750- 773 (33.15/29.80) MLAAVKGivAKPLEHSLRAYQRQD
782- 803 (35.34/24.48) LLRALKD..SLPLSRRTGAAEHQE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 75.80| 22| 34| 127| 148| 9
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127- 148 (38.71/25.03) DGETKKHRRSSSQTLWKSSSWL
162- 183 (37.09/23.70) EGTALKDSRTALELMHIISKWM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 141.91| 45| 48| 476| 522| 10
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476- 522 (66.11/55.24) SQEKYSKEKLVQSCLSDPDKIQALIRdMDKMDGNVGAVCQaLVELLR
527- 571 (75.80/53.12) SKETMSLKILCSQLVQKPQSLDVLLL.FEKLPVVLEPICQ.LLDGWR
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