Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | METGEYETNTLSINSVSSITYRLYEPSPNLSQNFASVALEIENSLRDRGYIVLYDAARRGLWHFLFLTKDEEENLDKVGDSLRLPFDVLEQGLVVKEEGIIEPPIMPKPRSQALQSGNTPTSLLSTNSTLEQAHRPALSSPLQTTTPSSQDHELKAESRTKTTAQSLLYEKLITAVSLTISTAFCRRTGAIPLNYRTILMSPTAYSAQPHGIAIGRPQILGTFRVYLTTTGALVVGISLTKCKGILSLDDTAASSLAPSGYSVLAAPFGIMTATQNFVPGDGGMSSLAQTPMTHFFSFRNGLDGQESLWKQACQRFLDFRGIAASTLGGCLWVNLLVPKSKSVDSKGDHRSSGAHSSFTLPWPRRLCFRKKNVDASSTSRVVDTVLSGHEESHDPLGNAKGWHSSITEREERIKRVMERTATMPKDSHPQPADSKTPKLSGLSPVALQRPNTATAGIMYPTPPDGIQQPNGVTPSMDGTFSSPGNPLSAQIMPEADVTIQNEPAGGDGLDQSPNVAEPKRRRSDNNLLGDTDNMLGGDVGGDMFDDNDITEADFNFFDEKPGDLDVDMAMSDLPSSEMAPSQAAEEPIRPVETMQQPLAPTPMSLPPAPSLPPSTPTPVPAVSPTSAPAPALPAATSLPPPPQPPPPQKETVVFAKPELKHARSQNEDAARRNRDIRVTPAKRESSPFDPHAVFKRVKASLKIPKYDSSISSQHPWRKAKVFESLDFDPAIPMISKKYEQGGFFDLSGLSKVERMEKANGDVRAVPETDYLKRHGKLNRKPRDRSTARHAGGKQYFALEPQILTTSPMKLDGSISDREDGNIESDQDDSSYTSDEPGSPHKASIRLIHGDDDILSQITSLRDCDIEEPDHQLAMELPRLSKSDISGVPLSQLFLDPEPLLLDMGLTDEDVIQIAQIVTEQAATGSLDIFNASDFEPATLSASEKRSDLSIHARDAFYTLEGIIMHFFEDAMPVRLKGLLDIQDLPILSQFIPRHITGREGNSEAMRPSNLYQIPSPHLEVQRADTKLSVLPSAVPFWESLGLSPSSGSKNINAICVFPGWSGMGDNVKAFLDRVKSVYELLKLGTFEVMPLGEDVEAGLLPYEVDRITTSPDATVTRHGSAMVECMEALRGVFNSLTITETNFVIYFVYSPENPGTIIESCTAFQRFYESYQKILASRKEPPQNELVLQLVSTDLLSSPSALVITQTSDLVRLCIETYDRCTLFGGPMPAPAIRLEQLLPRIIDFKLTTNPSASLIRENSCIHVAYSQSVDERWVTAAWTDDRGNQQATAAYCMGRKGKPPSRNMTEIANEIWETTLELISSWNVLWRVIITKCGPMPQHEVDFWVDLARTEIHAKVTLVLLTVDSSPSLQLLPPAIKLPAPTAALHTPVSTPQPSMQSPEPVATPATPAANATAATPSNDGAAAGAGDADSDDILVDATDQTWGAIASHRLSNSTSILEVQLSLMSGYLIKRTGLRLEDPPIVMEVNLIYTEATPRVHEPLLREMLGYFRGLGTLARARGVVDKEGDVRPWHVAAAEKAVRALYLLM |
Length | 1548 |
Position | Kinase |
Organism | Trichoderma asperellum CBS 433.97 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma. |
Aromaticity | 0.06 |
Grand average of hydropathy | -0.318 |
Instability index | 53.74 |
Isoelectric point | 5.22 |
Molecular weight | 169017.30 |
Publications |
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP20113 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 187.64| 32| 32| 429| 460| 1 --------------------------------------------------------------------------- 429- 460 (54.57/22.21) P....QP......A.DSKTPKL..SGLSPV....ALQRP.NTATAGIMYP 463- 493 (37.14/12.64) PdgiqQP........NGVTPSM..DG........TFSSPgNPLSAQIM.P 574- 607 (38.53/13.40) ......P......S.SEMAPSQ..AAEEPIrpveTMQQP.LAPTPMSLPP 608- 633 (27.44/ 7.31) ..................APSLppSTPTPV....PAVSP.TSAPAPAL.P 1380- 1411 (29.97/ 8.70) P....APtaalhtPvSTPQPSM..QSPEPV....A..TP.ATPAA..... --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 115.30| 27| 29| 318| 344| 2 --------------------------------------------------------------------------- 298- 314 (19.74/ 7.30) .FRnGLDGQ...ESLW.......KQACQ 318- 344 (46.49/27.70) DFR.GIAASTLGGCLWVNLLVPKSKSVD 348- 374 (49.07/29.67) DHR.SSGAHSSFTLPWPRRLCFRKKNVD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 72.33| 21| 31| 687| 707| 3 --------------------------------------------------------------------------- 687- 707 (38.32/28.34) PFDPHAVFKRVKASLKIP....KYD 715- 739 (34.01/24.14) PWRKAKVFESLDFDPAIPmiskKYE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 166.92| 54| 765| 68| 124| 4 --------------------------------------------------------------------------- 68- 124 (85.26/58.42) TKDEEENLDKVgdSLRLPF...DVLEQGLVVKEEGIIEPP...IMPKPR.SQALQSGnTPTSLL 832- 892 (81.66/45.98) TSDEPGSPHKA..SIRLIHgddDILSQITSLRDCDIEEPDhqlAMELPRlSKSDISG.VPLSQL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.60| 20| 765| 742| 763| 5 --------------------------------------------------------------------------- 742- 763 (28.50/30.43) GFFDLSGlsKVERMEKANGDVR 769- 788 (34.10/27.85) DYLKRHG..KLNRKPRDRSTAR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 58.25| 17| 18| 132| 148| 6 --------------------------------------------------------------------------- 132- 148 (30.12/18.00) QAHRPALSSPLQTTTPS 150- 166 (28.13/16.28) QDHELKAESRTKTTAQS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 65.84| 20| 20| 524| 543| 7 --------------------------------------------------------------------------- 524- 543 (38.61/22.29) DNNLLGDTD.NMLG...GDVGGDM 545- 568 (27.23/13.70) DDNDITEADfNFFDekpGDLDVDM --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 288.65| 89| 380| 1041| 1131| 8 --------------------------------------------------------------------------- 1041- 1131 (148.04/94.78) GLSPSSGSKNINAICVFPGWSGMGDNVKAFLDRVKSVYEL.LKLGT.FEVMPLGEDVEAGLLPYEVDRITTspDATVTRHGSAMVECMEALRG 1422- 1512 (140.61/84.01) GAAAGAGDADSDDILVDATDQTWGAIASHRLSNSTSILEVqLSLMSgYLIKRTGLRLEDPPIVMEVNLIYT..EATPRVHEPLLREMLGYFRG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.98| 15| 18| 179| 193| 11 --------------------------------------------------------------------------- 179- 193 (26.94/17.87) TI...STAFCRRTGAIPL 197- 214 (22.04/13.10) TIlmsPTAYSAQPHGIAI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 38.92| 12| 32| 14| 25| 12 --------------------------------------------------------------------------- 14- 25 (21.15/14.69) NSVSSITY.RLYE 43- 55 (17.77/11.05) NSLRDRGYiVLYD --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) ITEADFNFFDEK 2) PHAVFKRVKASLKIPKYDS 3) VVFAKPEL | 549 690 652 | 560 708 659 |
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