<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20111

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSFHPQTPQSPSQFSPATSSDPSLGSSGSVAAAGTGTTTLPTPAHSVNGSSSQLDSMMLDDSPQKRKRPLEDVGDDRELKKPHVDDYKLAIEDLHRDVGHKYLLLQSPHPESFPRTSEDLYEMYDLVDLATEVAREKPNGEKNALRKTYKGHIKRLGVTGHFDVAKKNDDAPSDFLSMLQVPDHEWNVHQVKGRSLMDGLSDVTKSTLGRALTMAKGPVPKSFWDSSVLGDIGPSNGDSSKAPSAKPTAPNTPLISMSGASAMSRSKSQLLPGQNPARPQRSIKKRSYGDSSYEGYGEGFPDDDTGLETGYSTGEGEGGQKRRKKASQNPNYDAAGKF
Length338
PositionHead
OrganismTrichoderma asperellum CBS 433.97
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
Aromaticity0.06
Grand average of hydropathy-0.865
Instability index55.79
Isoelectric point6.56
Molecular weight36488.95
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20111
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.51|      23|      23|      72|      94|       1
---------------------------------------------------------------------------
   72-   94 (39.43/22.04)	DVGDDR.ELKKPHVDDYKLAIEDL
   97-  120 (37.07/20.33)	DVGHKYlLLQSPHPESFPRTSEDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.89|      22|      23|     232|     253|       2
---------------------------------------------------------------------------
  232-  253 (39.45/23.71)	I.GPSNGDSSKAPSAKPTAPNTP
  257-  279 (34.45/19.70)	MsGASAMSRSKSQLLPGQNPARP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.82|      22|      22|     156|     177|       4
---------------------------------------------------------------------------
  156-  177 (38.30/21.24)	LGVTGH.FDVAKKNDDAPSDFLS
  179-  201 (36.51/19.97)	LQVPDHeWNVHQVKGRSLMDGLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.40|       9|      24|      16|      27|       5
---------------------------------------------------------------------------
   16-   27 (12.25/13.16)	PATSSDpslGSS
   43-   51 (18.15/ 8.69)	PAHSVN...GSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20111 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FWDSSVLGDIGPSNGDSSKAPSAKPTAPNTPLISMSGASAMSRSKSQLLPGQNPARPQRSIKKRSYGDSSYEGYGEGFPDDDTGLETGYSTGEGEGGQKRRKKASQNPNYDAAGKF
2) MSFHPQTPQSPSQFSPATSSDPSLGSSGSVAAAGTGTTTLPTPAHSVNGSSSQLDSMMLDDSPQKRKRPLEDVGDDRELKKPHVDDYKLA
223
1
338
90










Molecular Recognition Features






MoRF SequenceStartStop




1) NYDAAGKF
2) QKRRKKAS
3) YEGYGEGFPD
331
320
293
338
327
302