<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20081

Description Uncharacterized protein (Fragment)
SequenceMASKGGELDEIVWRSPELAQSMQGVHDNSILFYFAGSPFFDPTSNNAILYSQAMFNPNMFHFIQTREAFEGRLKTMSGLEFMVAQEPAEKAPNTGTGVWVIRKQTRRKRPPEEDEVTVHSTYYLIGENIYMAPSVGDIIGSRMTSIISYMNKFISTAASLPDFSPSLGHTYMPPSSSRLRAPESQLSQASKEATPLPDSLPNAKKAPQTSANNTYLGNRLLAETLNISLKYGDEYMDEKPITGQPGDFHLSTTGRTEKDKLMVPLPGKTPTSMETKPGASMPDLVTDIPPARKGSKGDKSPKTPGGGT
Length308
PositionHead
OrganismAmorphotheca resinae ATCC 22711
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Leotiomycetes incertae sedis> Myxotrichaceae> Amorphotheca.
Aromaticity0.08
Grand average of hydropathy-0.541
Instability index56.00
Isoelectric point6.54
Molecular weight33688.74
Publications
PubMed=29315638

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20081
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.29|      25|      33|     141|     165|       1
---------------------------------------------------------------------------
  141-  165 (43.86/24.22)	SRMTSIISYMNKFISTAASLPDFSP
  177-  201 (42.43/23.24)	SRLRAPESQLSQASKEATPLPDSLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.10|      10|      36|     236|     245|       5
---------------------------------------------------------------------------
  236-  245 (19.62/10.00)	MDEKPITGQP
  273-  282 (19.48/ 9.88)	METKPGASMP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20081 with Med6 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GDEYMDEKPITGQPGDFHLSTTGRTEKDKLMVPLPGKTPTSMETKPGASMPDLVTDIPPARKGSKGDKSPKTPGGGT
2) PSLGHTYMPPSSSRLRAPESQLSQASKEATPLPDSLPNAKKAPQTSANNTYLG
232
165
308
217










Molecular Recognition Features






MoRF SequenceStartStop




1) ETKPGASMPDLVTDIPPARKGSKGDKSPKTPGGGT
274
308