<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20070

Description Cyclin-C
SequenceMAANYWESTQRKHWQFTKEQLASMRQRLEDEDPALVQSFGLPQLRHLNIFFNQQLNRLGKRLGIRQQAVATAQVYIKRFYIKVEIRRTNPFLVLATALYLACKTEECPQHIRLMTQEARGLWTDMQLFHEPSKIGECEFWLISEMNSHLIIHQPYRTLTSLQSNLNLTNDELALAWSIVNDHYMTDLPLIYPPHAVALTAILLAIVFRPSQSSGGGATAQNQNQASAGGAGSAQLNNTGIPGVNAMTAAFNQLQQSRHPMTPGGVAGPQSSQPGAADNASNAQKIERYSKVQRFGHWLSESNVDLEAMVDCTQELISFYECQESYNDKLTREQIVRFIKAKGLDKG
Length346
PositionKinase
OrganismConiella lustricola
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Diaporthales> Schizoparmaceae> Coniella.
Aromaticity0.08
Grand average of hydropathy-0.378
Instability index51.22
Isoelectric point7.71
Molecular weight38962.78
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP20070
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.08|      40|     154|     132|     172|       1
---------------------------------------------------------------------------
  132-  172 (67.02/48.53)	SKIGECEFWLiSEMNSHL.IIHQPYRTLTSLQSNLNLTNDEL
  289-  329 (68.06/44.76)	SKVQRFGHWL.SESNVDLeAMVDCTQELISFYECQESYNDKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.99|      42|      46|     193|     234|       2
---------------------------------------------------------------------------
  193-  234 (70.54/35.34)	PHAVALTAILLAI.VFRPSQSSGGGATAQNQNQASAGGAGSAQ
  241-  283 (71.45/35.86)	PGVNAMTAAFNQLqQSRHPMTPGGVAGPQSSQPGAADNASNAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.48|      13|      32|      16|      28|       4
---------------------------------------------------------------------------
   16-   28 (22.34/14.60)	FTKEQLASMRQRL
   50-   62 (23.15/15.36)	FFNQQLNRLGKRL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP20070 with CycC domain of Kingdom Fungi
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