<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20055
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDDQTYNMDVEDLFGDSEQVTIPSIPVPPVKGLAQRVSELIASGCCQKLAWSKNGCVAYITKDGQGVNLRVFSRDPSTGKWGLGKDSSLDIPRRRESFPFVHISWSHLGNDIAVIDAAGHVMIFSCMMALDRMTYMRTDLGQPDAEMDAVVGMHWLAILPYEQKNHIAWSASNANGTWDFSIASHVFSDAHHPVEGKASLIYLKKHGELKLRFQQTDNSWQEASAVLGPMVTTREPFTHAAFASNNDNTLLLAAYDNSERLHLYRVEVTWNVQPPKPGHQPHQPKHFDKPDLKVTEITIENNCGPNIVNSDLTGGPESKINVPAKLTHLNFLPTTPQKDDGTVPTIQAIFATPTNVASFDQTPQQNPFSIVAKWEVRHTQQNHLHPSLDKVTSKKKSVSSVPTKGVFTLKRVSPDVVMHSVIVSFVPLWYNMILAFCHSDGTIEFRKRSTGEVITPDYNTDTVTSLPQAGFTFSPTEPSLNVALSPNHCMAVTMQQDNTLKLRSMEYQYGTLATDDFDPKHSAALAALVLQSASAANQYFSSDDIFAIIGPLTENRKSEFISLLFDGLKVDIDCGISDTSQNHLLLLGRSPTFVKTLSAAHLLGLKGSVDRTLTSKMSWIILNIKYITQILTTIARMHGQIEKNPLRPEVVPQFIGICRWIMHFMVYMIDELLVVGRVFKGTTPDKATLEAKLHELNKPALLILLSSFPRMMMKLWSNPLTWVVRTAFTTMNNNPSHELRALYSPLHQALSDIPFDWRLFDQLVSEAHHLVRSSYQRAGMQDRERGMAERQLILGHIPDVLFPAARRLVTDTLFNDTQPNGCLADKLDPAKIYFFDTTWLGFQESRRANEWFNTHVVDVCQKMIIRGTGTQVHPTINSSSQNRGRSDSTVSTDGKDKLKERHLRRCVRCAAYMEDVRQGMPGYGDRHFSWLMGVAKHCVCGNSWVLAEEKKGAP |
Length | 954 |
Position | Tail |
Organism | Corynespora cassiicola Philippines |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Pleosporomycetidae> Pleosporales> Corynesporascaceae> Corynespora.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.267 |
Instability index | 39.13 |
Isoelectric point | 7.09 |
Molecular weight | 106871.85 |
Publications | PubMed=29551995
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP20055
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 327.02| 104| 132| 673| 787| 1
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673- 787 (160.06/148.12) LVVGRVFKGTTPDkATLEAKLhelnKPALLILLSS....FPR.MMMKLWSNplTWVVRTAFTTMNNNPSHELRALY..SPLHQALSD..IPFDWRlfDQLvsEAHHLVRSSYQRAGMQDRERGM
808- 920 (166.96/119.22) LVTDTLFNDTQPN.GCLADKL....DPAKIYFFDTtwlgFQEsRRANEWFN..THVVDVCQKMIIRGTGTQVHPTInsSSQNRGRSDstVSTDGK..DKL..KERHLRRCVRCAAYMEDVRQGM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 75.34| 24| 62| 398| 427| 2
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398- 427 (31.80/33.61) VSSVPTKGvFTLKRVSPdvvmhSVIVSFVP
463- 486 (43.54/26.01) VTSLPQAG.FTFSPTEP.....SLNVALSP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 75.83| 22| 62| 102| 125| 3
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102- 125 (37.18/24.55) HISWSHL.GNDIAVIDAAGHVmiFS
166- 188 (38.66/19.73) HIAWSASnANGTWDFSIASHV..FS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 40.54| 12| 15| 586| 597| 6
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586- 597 (20.77/14.21) LLGRSPTFVKTL
602- 613 (19.77/13.13) LLGLKGSVDRTL
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