<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20045
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDSLIRTWALFFDRCLENRLSSELFDTAVAQLHSKSPLPGRKLAAVLLKPRSANAVSPDPRVIIYLERLLALKKVDASDVLSSAFQYSNDRPSRTGDDGHSKDDQSRWQNPPELEEIVFHRLHKAFSSGERPVSNAEAARTLAVASGWMSAMVTSHTSDSMIQAMAGIQQQPQQQSINVREALGMLVVGLIENPRILQLLTKEELKDVRKNFAQSLSTFIPFLSQTSIQISNRLEISQKEHDLHDKSVSNINGESGENGGLEVAALQLEAVMDLPTVNTRSGLYIFLNSLLVARPLTDDFMIVNYLHSRYKIDPQIMGTDLVTAAFDILANAMYRSEPSQTMFSLKSFLINKIPLLLGQLSSSMFLTPELCITQALSHVDPNAFPAFSQGFDDIMGNNPSLSDVRQDFLNSCALHGLIPANTIERLLGETPLQGPPETKYVKKDLLSQCKDNFEKVNMLIDELENLDGNAGAIVGALTEFISHLCETQMTMYLKTISNLLSKKIQALDVILQFTSPASILRPLCQFLDEWRYDGDQGEYQPVYDEFGAILLLILAFVHRYDLSYHDLGINHDSFVAQLLERGHRSIATDDLTEEQGRQLGSWLRGLYDSDKEGLSNEVFASCRPQDFYLIVPTLFSQTVMACAAEVLSLDSVKGGLEYLNETFLLPALVGGLTWMATHAMEQTHQDLEVLMQIFHKLVRSAHTSGRGDAQAMHSTILSIVSDRLEKCFRTLKRRHPSRTDIEPLLQAIKGHLNYERSVYTSMTELEQWITAPNNTLYSSLRSTVQQLSQWGSPASLQPNPPSYTHRQVYTSIMILGTSRTLRAIVDEVKAQTDAGNGPAALDIGVSLICAPTVENSAVPVDWVGSLTPAPASPRTCMNLREMLKAEFDNAASLISTDPLAAETIARLHRRVEAQLAVIAQAGLSAAQINLQNVGMVDVQPQDMQDLDKAMNDAAAATMAAANGDMDMNKQALQRSIDDHLDLTGTGGALDLSGMGVGGPGTDDMSTNMDDLNTLDLGDMDMGMGMGDDDDAWGLDFNNM |
Length | 1039 |
Position | Tail |
Organism | Corynespora cassiicola Philippines |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Pleosporomycetidae> Pleosporales> Corynesporascaceae> Corynespora.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.161 |
Instability index | 41.21 |
Isoelectric point | 4.88 |
Molecular weight | 114501.73 |
Publications | PubMed=29551995
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP20045
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 79.90| 21| 25| 989| 1012| 1
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989- 1009 (41.31/25.91) LDLSGMGVG.GPGTDDMSTNMD
1014- 1035 (38.59/16.43) LDLGDMDMGmGMGDDDDAWGLD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 69.45| 21| 25| 754| 777| 2
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757- 777 (38.00/26.43) SVYTSMTELEQWITA....PNNTLY
779- 803 (31.45/12.85) SLRSTVQQLSQWGSPaslqPNPPSY
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 100.64| 26| 26| 543| 568| 3
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519- 540 (24.00/12.78) ......ILRPLCQFLDewRYDGDQGEYQ
543- 568 (46.26/31.96) YDEFGAILLLILAFVH..RYDLSYHDLG
571- 591 (30.37/18.27) HDSFVAQLL...ERGH..R.SIATDDL.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 53.01| 16| 23| 297| 314| 4
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297- 314 (25.16/26.59) TDDFMIVNylHSRYKIDP
323- 338 (27.84/20.27) TAAFDILA..NAMYRSEP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 100.88| 27| 27| 861| 887| 6
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846- 864 (31.59/18.27) SL.ICAPTVENSAV........PVDWVG
865- 891 (45.33/29.36) SL.TPAPASPRTCMNLREMLKAEFDNAA
892- 915 (23.95/12.10) SLiSTDPLAAETIARLHRRVEAQL....
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 80.31| 27| 31| 678| 708| 8
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678- 708 (36.18/39.89) HAMEQTHqdLEV....LMQIFHKLVRSaHTSgRGD
710- 740 (44.13/29.05) QAMHSTI..LSIvsdrLEKCFRTLKRR.HPS.RTD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 51.99| 15| 15| 645| 659| 10
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645- 659 (24.45/14.46) EVLSLDSVKGGLEYL
661- 675 (27.55/17.20) ETFLLPALVGGLTWM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 148.30| 48| 220| 23| 70| 11
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23- 70 (78.62/57.07) ELFDTAVAQLHSKS.PLPGRKLAAVLLKP.RSANAVSPDPRVIIYLERLL
242- 291 (69.69/49.62) DLHDKSVSNINGESgENGGLEVAALQLEAvMDLPTVNTRSGLYIFLNSLL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 41.30| 11| 32| 934| 944| 12
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934- 944 (21.10/11.23) GMVDVQPQDMQ
963- 973 (20.20/10.48) GDMDMNKQALQ
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