<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP20020
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MATQSAIASWQKFLNHSLVTRLDPEPFTTYIRILSSKSPLSSSYICSIFLRPQSHNDTSIDPRILRYLQILLAEELVDCAGVLRALLKYSSLWTFRHDGNLQQEATGGTEKAKGVKEAAQRWKNSYSAEEMMLYRLAKTVSSGAAPKSAQEAVEILAVCIQWMEMVTTAMGQGAHAMLNPESHAEEIGMLGMALGTLMVAVVGNVKILETLEKGHCQKGTVKELGKALNGFVPLLLQNSPQNAARLDVFRSQTLLTITPVDKKEQAADEEINEIIDSTIGIDSIAVADLPTVNSRAGLYVYLSSLGDIQATMIDLILASFDVLANATFRNEGQQTTTILRSFLVNKLPLLLSTLATSLYPPLTSEYCITEALGHVNTDAFPTLSTLFAESSNNDMFSDSVRQDFCFACCLHGLIPEPSIETLLGDIPMQSLPAGGRYSKHDLVQQCLSDSERTEGLISELENMDGNVGARYNILPNYIMISNKRQVIRHLCSSKETMTLKSLCSQLARNPSTLDVMLLFDKPTSFLQPICDLLDNWHYDEDQGEYQPVYEEFGSILLLVVLFTHRYNLSVVDLGIRAPNSFVARLLTQGHLSRALEPLTEQEQSHLDGWIRGLFEPEGGGLGDELMSSCPPQDFYLLVPTLFHHIVLALSTNNLTEEGLKGGLEFMVEPFLLPCLIPGINWLSAHLWASRGDANAVLQILSALITNPSSSNAEASQLLNSILKIIAKNLEHSLRWLQRAEPVRHDIEPISKALKPNLGWERRGASGHTELESWTATPGGGLVASIKHTISTLVQWGLDPAMNTMPASYTHRQILIGMKILGAKRLLNAIIDEVKTQTQAGNGSVVLDIATSLICAPDPVSFDSSTSASIDLLSGVSSSPQPLQRRLNLREALKVETDKMPKVHKTDTFHAETVIRLFRRVEAQLAQQQSLLPHDDGLGGLNAVMGNGVMGDAGLGAAEQQDIDNMVTANDDLMSGLMGGTGHGDDLLDSFGAGDGLGDGMGF |
Length | 1002 |
Position | Tail |
Organism | Rutstroemia sp. NJR-2017a WRK4 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes>
Helotiales> Rutstroemiaceae> Rutstroemia> unclassified Rutstroemia.
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Aromaticity | 0.06 |
Grand average of hydropathy | -0.036 |
Instability index | 48.31 |
Isoelectric point | 5.11 |
Molecular weight | 109327.67 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
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GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP20020
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 158.34| 41| 196| 423| 463| 1
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372- 416 (46.38/23.70) ....LGHVNTDAFPTLSTL.........FAESSNNDMFSDSVRQDfcfacclhGLIPE
419- 459 (70.42/39.32) IETLLGDIPMQSLPAGGRY.........SKHDLVQQCLSDSERTE........GLISE
460- 501 (41.54/20.56) LENMDGNV.......GARYnilpnyimiSNKRQVIRHLCSSKETM........TLKS.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 174.96| 44| 325| 590| 633| 2
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590- 633 (84.62/40.93) HLSRALEPLTEQE......QSHL...DGWIRGLFEPEGGG.LGDELMSSCPPQD
749- 781 (28.49/ 9.64) .ISKALKPNLGWErrgasgHTEL...ESWTA...TP.GGG.L............
915- 961 (61.85/28.24) RLFRRVEAQLAQQ......QSLLphdDG.LGGLNAVMGNGvMGDAGLGAAEQQD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 79.36| 25| 142| 691| 715| 3
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691- 715 (41.24/24.08) GDANAVLQILSALITNPSS....SNAEAS
840- 868 (38.12/21.73) GNGSVVLDIATSLICAPDPvsfdSSTSAS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 134.38| 46| 625| 148| 206| 5
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148- 206 (67.15/57.52) SAQEAVEILavcIQWmemvttamgqGAHAMLN..PESHAEEIGMLGM.ALGT..LMVAVVGNVK
784- 834 (67.23/34.44) SIKHTISTL...VQW..........GLDPAMNtmPASYTHRQILIGMkILGAkrLLNAIIDEVK
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