<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19986

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSAHDGERSPKRQRLDSYSPASPRPTAEPTKTFVPNYSTPPPSVRMSPSWTAQSQTSQQLQHQPGGSNFPSPPSTAGFQNRMTNRDSEHGGSGHHTPASQDDGDVRKDGDGDSEMTDRRETPGDGHRRSDHERQRGEGHNAATSSLDAVPQLYRIRTSPIVPSRPHASQNLLALYDLSAIQKRVARVDDAGNKIKLRKSYASKVKNLGLEGLNKAAPNQGELRGLVDPDWNFETAPGQTLWDQTWQESRLDDSAAENELLGKLDSALQFQPGRLPRNEHEAWKKTLGLDESTLAAKSLAASKDAKRPVPNAHLAKTAPATAMRASAPSSPRNGQRLDRAGKKRSYGDSSFEGYGEGYEDDTDLDDNGRRRDSSKRQKRKVSSSAFGSYQASGT
Length393
PositionHead
OrganismCercospora berteroae
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Cercospora.
Aromaticity0.05
Grand average of hydropathy-1.152
Instability index60.75
Isoelectric point9.28
Molecular weight42989.40
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19986
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.02|      29|      31|      36|      64|       1
---------------------------------------------------------------------------
   36-   64 (54.11/28.45)	NYSTPPPSVRMSPSWTAQ.SQTSQQLQHQP
   68-   97 (47.91/24.34)	NFPSPPSTAGFQNRMTNRdSEHGGSGHHTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.39|      22|      33|     332|     353|       2
---------------------------------------------------------------------------
  332-  353 (40.78/20.27)	NGQRLDRAGK.KRSYGDSSFEGY
  366-  388 (34.61/16.28)	NGRRRDSSKRqKRKVSSSAFGSY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.73|      33|      36|     221|     255|       3
---------------------------------------------------------------------------
  215-  253 (53.30/40.06)	AApnqgELRGLVDPDWNFEtaPGQTLWD..QTWQES.RLDDS
  254-  291 (44.43/26.99)	AA..enELLGKLDSALQFQ..PGRLPRNehEAWKKTlGLDES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.30|      11|      26|     106|     116|       4
---------------------------------------------------------------------------
  106-  116 (20.22/10.79)	RKDGDGDSEMT
  133-  143 (20.08/10.66)	RQRGEGHNAAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19986 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LAAKSLAASKDAKRPVPNAHLAKTAPATAMRASAPSSPRNGQRLDRAGKKRSYGDSSFEGYGEGYEDDTDLDDNGRRRDSSKRQKRKVSSSAFGSYQASGT
2) MSAHDGERSPKRQRLDSYSPASPRPTAEPTKTFVPNYSTPPPSVRMSPSWTAQSQTSQQLQHQPGGSNFPSPPSTAGFQNRMTNRDSEHGGSGHHTPASQDDGDVRKDGDGDSEMTDRRETPGDGHRRSDHERQRGEGHNAATSSLDAVPQLYRIRTSPIVPSRPHASQ
293
1
393
169










Molecular Recognition Features






MoRF SequenceStartStop




1) AHLAKTA
2) LDSYS
3) QLYRIRTSPIV
4) TAEPTKTFVPNY
311
15
151
26
317
19
161
37