<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19981
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MAFEKSSFLPSGLMTSLDSITRACLARGISAARWTLLAREAVAGAGKTAQDIESELSRSLLDLIVADPSGTTRALEYLDGALDRDHPPPLRPKSSSVASSLRWRRVIPLCYLREQATSSLPRLSRRPAGDYTSSAPAHTLYLTELRALRDELAGGTTEQLAALERDLAALMDRSSKPRRRRQPASSNLEDLDRGDRSIGPDAALLTASLLLDPYIPPRILDERLQGLLRYRRDQATFRGSTSSEGAALLLEETFGSLIWALHSATTHAFVLESLVYAKVPKSIESCLNQSDSAVTHEILRDALHRLRAPGPQGGSHNEASSGLSVQDVYDQLVTSFCQQGTLSPSEGCDLAFDADAADLQPLAVTELEQKLASADQAGFPTFLQEHAHNFGSQARSALSLAQEFKRRADALDLGALADLCETLVAHTDELAVILLHVAPQELLGPVRHVLDVVAHSRDDSNDSIAIERCGKLVNFLQIVVHRFELRDDLDRHLGSSSSALSTWLRHPSATFTLSHLAESERNVVGGWIGALFGEGISDDLIHSTNPMTLFKVAPTILKQSIMACRVGVVDIESLRDAIDPKARQPLLEVLRIFCLSDTLPSSVLELVSSKVVEIAVSGHILSTAERLRVLKAMVPFTPARSPVAWATDPQDPAERPTTAEAQEAGRPRHPFVLTERDRRMALASSCGMAGIDSHEARRLLGTGVLPSEVTSHYGRLERSAAALVATNEIALSRLVPEISRLMLGCGTAVAPDWAAFVGNVLGGALTMVGASERGRHLRVLARAYEEATMLATNAAGSAAAIDRLLSWPAVSGDPAFSPHAHT |
Length | 822 |
Position | Tail |
Organism | Rhodotorula taiwanensis |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina>
Microbotryomycetes> Sporidiobolales> Sporidiobolaceae> Rhodotorula.
|
Aromaticity | 0.05 |
Grand average of hydropathy | -0.079 |
Instability index | 55.37 |
Isoelectric point | 5.85 |
Molecular weight | 88683.57 |
Publications | PubMed=29375494
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
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GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
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GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
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Interaction
Repeat regions
Repeats |
>MDP19981
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 264.41| 85| 114| 398| 489| 1
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398- 489 (125.74/92.12) LSLAQEFKRRADALDLGAL..ADLCETLVAHTDELAviLLHVAPQELLGPVRHVlDVVAHSRDDSNDSIAIERCGKLVNFLQIvvhrFELRDDL
513- 599 (138.67/83.07) LSHLAESERNVVGGWIGALfgEGISDDLIHSTNPMT..LFKVAPTILKQSIMAC.RVGVVDIESLRDAIDPKARQPLLEVLRI....FCLSDTL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 272.61| 88| 126| 14| 105| 2
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14- 105 (134.91/89.65) MTSLDSItRACLARGiSAARWTLLAREAVAGAGKTAQD..IESELSRSLLDLIVADPS.GTTRALeyLDGALDRDHPPPLRPKSSSVASSLRWRR
142- 232 (137.71/78.18) LTELRAL.RDELAGG.TTEQLAALERDLAALMDRSSKPrrRRQPASSNLEDLDRGDRSiGPDAAL..LTASLLLDPYIPPRILDERLQGLLRYRR
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