<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19970

Description Uncharacterized protein
SequenceMTGQPATIVARWPSANPLSAIPLLGRALTVSRPGTSLGRRAVQIKPYRLPAGGREVPQGRNMYVVREHDGNADRVAVFVEDPNAPTRPPGKGKSTAHKQDDDDDDDDILFVDQDAREREKGHPRWTYCSIVQPPLSTSGDGDSAPAAAALFDTFIQRALFAPPQPGGGQSTSNSREGAAAAGRSSTPQQQQQQQQQAGSGPHQHWQPRAQVISIEGFVFALASSAGATAGATGSGATAPDWIIRVGSVGLKGGAASGVTKGCILEATYVPVPYLPTGSTFARDFVLSLFPDAAVRNGEIELVEPSETDFAEAGMLDPPDADKGEEVGEWEWQGKHTLFAYVHQFKKEGIL
Length350
PositionHead
OrganismRhodotorula taiwanensis
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Pucciniomycotina> Microbotryomycetes> Sporidiobolales> Sporidiobolaceae> Rhodotorula.
Aromaticity0.07
Grand average of hydropathy-0.454
Instability index39.23
Isoelectric point5.33
Molecular weight37143.77
Publications
PubMed=29375494

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19970
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.03|      32|      33|      25|      57|       1
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   11-   47 (44.47/23.75)	RWPSANplSAIPllGRALTVSR..PGTSlGRRAVQIKPY
   48-   82 (48.56/22.68)	RLPAGG..REVP.qGRNMYVVRehDGNA.DRVAVFVEDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.51|      25|      28|     275|     300|       2
---------------------------------------------------------------------------
  275-  300 (40.64/26.70)	PTGSTFARDFVLSlFPDA..AVRNGEIE
  304-  330 (42.87/24.06)	PSETDFAEAGMLD.PPDAdkGEEVGEWE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.28|      28|      34|     198|     230|       3
---------------------------------------------------------------------------
  198-  230 (45.90/35.21)	GSG.PHQHWQPRAQVISIEGfvfalASSAGATAG
  233-  261 (45.38/24.41)	GSGaTAPDWIIRVGSVGLKG.....GAASGVTKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.80|      16|      74|      84|     100|       4
---------------------------------------------------------------------------
   84-  100 (24.59/13.92)	APTRpPGKGKSTAHKQD
  161-  176 (29.21/12.63)	APPQ.PGGGQSTSNSRE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19970 with Med20 domain of Kingdom Fungi
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