<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19962

Description Mediator of RNA polymerase II transcription subunit 8 (Fragment)
SequencePTEIAIAHTHDVRIPRPTLHEEKNQQRKAKQDKMATLGLDDDELKSVEQTLSRLAQLSSSIQSLKMDILKSNPLPHPSSLQASAQILQRNLQTVLDNLSENAELFARIAIHPSTNYPGRAQENILTQLLRKKLEPDVEELVAEGRETARLATPEGVAELQGIWDELREWTHERIAAYVRDEAGDVYTKEEREMGADQVRTGLRRGLDEESDEEEEEAGDGDDDDGNDEGDDEDGEKGKTQPPRGPEPETLLWFATRGDFEVPRNVEYERKGGVRKGLEGVNIPPERMEGVGSA
Length293
PositionHead
OrganismTolypocladium paradoxum
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Ophiocordycipitaceae> Tolypocladium.
Aromaticity0.03
Grand average of hydropathy-0.945
Instability index46.40
Isoelectric point4.62
Molecular weight32785.68
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364144

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19962
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.23|      17|      17|     209|     225|       1
---------------------------------------------------------------------------
  187-  201 (19.50/ 6.07)	..TKEEREMGADQVRTG
  209-  225 (29.45/12.21)	ESDEEEEEAGDGDDDDG
  228-  244 (30.28/12.72)	EGDDEDGEKGKTQPPRG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.35|      10|      17|     264|     273|       2
---------------------------------------------------------------------------
  264-  273 (18.51/10.44)	NVEYERKGGV
  281-  290 (19.84/11.65)	NIPPERMEGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.40|      13|      17|      59|      72|       3
---------------------------------------------------------------------------
   59-   72 (17.81/18.35)	SSIQSlKMDILKSN
   78-   90 (21.60/16.14)	SSLQA.SAQILQRN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19962 with Med8 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DEAGDVYTKEEREMGADQVRTGLRRGLDEESDEEEEEAGDGDDDDGNDEGDDEDGEKGKTQPPRGPEPETLLWFATRG
2) IAIAHTHDVRIPRPTLHEEKNQQRKAKQDKMATLGLDDD
3) PRNVEYERKGGVRKGLEGVNIPPERMEGVGSA
180
4
262
257
42
293










Molecular Recognition Features






MoRF SequenceStartStop




1) GEKGKTQ
2) PEPETLLWFATRGDFEVPRNVEY
234
245
240
267