Description | Mediator complex subunit 14 |
Sequence | MAPVQLENHQLVPPGGGGGGSGGPPSAPAPPPREPPWRRPLQLRLXXXXXXXAAAAASPGYRLSTLIEFLLHRAYSELMVLTDLLPRKSDVERKIEIVQFASRTRQLFVRLLALVKWANNAGKVEKCAMISSFLDQQAILFVDTADRLASLARDALVHARLPSFAIPYAIDVLTTGSYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTTDLPPQLANLTVANGRVKFRVEGEFEATLTVMGDDPDVPWRLLKLEILVEDKETGDGRALVHSMQISFIHQLVQSRLFADEKPLQDMYNCLHSFCLSLQLEVLHSQTLMLIRERWGDLVQVERYHAGKCLSLSVWNQQVLGRKTGTASVHKVTIKIDENDVSKPLQIFHDPPLPASDSKLVERAMKIDHLSIEKLLIDSVHARAHQKLQELKAILRGFNANENSSIETALPALVVPILEPCGNSECLHIFVDLHSGMFQLMLYGLDQATLDDMEKSVNDDMKRIIPWIQQLKFWLGQQRCKQSIKHLPTISSETLQLSNYSTHPIGNLSKNKLFIKLTRLPQYYIVVEMLEVPNKPTQLSYKYYFMSVNAADREDSPAMALLLQQFKENIQDLVFRTKTGKQTRTNAKRKLSDDPCPVESKKTKRAGEMCAFNKVLAHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFSHAIRLLKIPPCKGITEETQKALDRSLLDCTFRLQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVYLTYENLLSEPVGGRKVVEMFLNDWNSIARLYECVLEFARSLPDIPAHLNIFSEVRVYNYRKLILCYGTTKGSSISIQWNSIHQKFHISLGTVGPNSGCSNCHNTILHQLQEMFNKTPNVVQLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDIYCRSRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSNQDARRRSVNEDDNPPSPIGGDMMDSLISQLQPPPQQQPFPKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGTLDPSSPYTMVSPSGRAGNWPGSPQVSGPSPAARMPGMSPANPSLHSPVPDASHSPRAGTSSQTMPTNMPPPRKLPQRSWAASIPTILTHSALNILLLPSPTPGLVPGLAGSYLCSPLERFLGSVIMRRHLQRIIQQETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPENAGQWKPDELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQATQLKWNVQFCLTIPPSAPPIAPPGTPAVVLKSKMLFFLQLTQKTSVPPQEPVSIIVPIIYDMASGTTQQADIPRQQNSSVAAPMMVSNILKRFAEMNPPRQGECTIFAAVRDLMANLTLPPGGRP |
Length | 1422 |
Position | Tail |
Organism | Pan paniscus (Pygmy chimpanzee) (Bonobo) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Hominidae> Pan. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.209 |
Instability index | 52.38 |
Isoelectric point | 9.03 |
Molecular weight | 157538.48 |
Publications | PubMed=22722832 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU365082 |
GO - Cellular Component | mediator complex GO:0016592 IEA:UniProtKB-UniRule |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:UniProtKB-UniRule |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP19941 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 136.69| 35| 38| 1037| 1074| 1 --------------------------------------------------------------------------- 1017- 1036 (26.91/ 7.75) ...........QQQP...FPKQPGT...S..GAYPLTSP.... 1038- 1074 (59.99/30.82) TSYH....STVNQSPSMmHTQSPGTlDPS..SPYTMVSPSGRA 1079- 1115 (49.79/22.10) GSPQvsgpSPAARMPGM....SPA..NPSlhSPVPDASHSPRA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 77.08| 24| 29| 264| 292| 3 --------------------------------------------------------------------------- 264- 287 (40.30/33.25) ILVEDKETGDGRALVH....SMQISFIH 294- 321 (36.78/18.28) LFADEKPLQDMYNCLHsfclSLQLEVLH --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 45.49| 14| 28| 180| 193| 4 --------------------------------------------------------------------------- 180- 193 (26.30/18.71) RLPTCIRDKII....PPD 206- 223 (19.19/11.02) QLNQILRHRLVttdlPPQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 95.19| 29| 30| 81| 109| 5 --------------------------------------------------------------------------- 81- 109 (46.39/34.32) LTDLLPRKSDVERKIEIVQFASRTRQLFV 114- 142 (48.79/36.50) LVKWANNAGKVEKCAMISSFLDQQAILFV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 40.75| 12| 29| 371| 382| 7 --------------------------------------------------------------------------- 371- 382 (20.47/15.51) IKIDENDVSKPL 402- 413 (20.28/15.28) MKIDHLSIEKLL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 113.41| 34| 161| 702| 764| 8 --------------------------------------------------------------------------- 609- 644 (50.24/18.97) DLVFRTKtGKQTRTNAKrKLSDDPCPVESKKTKRAG 719- 752 (63.17/51.35) DCTFRLQ.GRNNRTWVA.ELVFANCPLNGTSTREQG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 171.41| 51| 161| 1122| 1179| 9 --------------------------------------------------------------------------- 1124- 1179 (84.58/49.39) TNMPPPRKLPQRSWAAsIPTILThsalNILLLPSPTPGLVPGLAGSYLCSPLERFL 1308- 1335 (38.34/11.43) ............................LTIPPSAPPIAPPGTPAVVLKSKMLFFL 1391- 1422 (48.48/15.66) AEMNPPRQGECTIFAA.VRDLMA....NLTLPPGGRP................... --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) MASAGVAAGRQAEDVLPPTSDQPLPDTKPLP 2) PRPQSPARAREEENYSFLPLVHNIIKCRDGAGLK | 1 50 | 31 83 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab