<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19896

Description Uncharacterized protein
SequenceFSAAGSSCSGVGERLEQAGAGCSSLPVEKDRDLTNGFLFPQIRNMVAVLESLSRKYETRLGKLINDVRKKTKNEELAKRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSRNDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVLQQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPSAESPVRWLEQPESHQRLAGPGCKAGLSPAEPLLSRAGFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKELSRNEIIQSYLSRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDLPGLTREVTQDDLDRIQASQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Length607
PositionUnknown
OrganismPan paniscus (Pygmy chimpanzee) (Bonobo)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Primates> Haplorrhini> Catarrhini> Hominidae> Pan.
Aromaticity0.04
Grand average of hydropathy-0.853
Instability index60.85
Isoelectric point9.34
Molecular weight65999.10
Publications
PubMed=22722832

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19896
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.55|      18|      39|     121|     139|       1
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  121-  139 (27.80/15.57)	EV...GAAGPPRSIHDlKSRND
  162-  178 (29.16/12.44)	DL...GHPGPPPKVS..KASHD
  202-  222 (23.59/ 8.61)	SLdgsGHAGPEGSRLE.RDEND
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     405.15|     110|     120|     225|     343|       2
---------------------------------------------------------------------------
  185-  320 (166.03/72.32)	SPLPTNGISGSP..........EsfassldgsghagpegsrlerdendkhsgkipVNAVRPHTSSPG.....LGKP......PGP.CLQPKASVLQQLDRVDETPGPPHPKGP..PRCSFSPRNSRHE.......GSFARQQSLYAPKGSvPSPSPR.......PQALDATQVP
  321-  418 (91.66/38.49)	SPLPLAQPSTPPvRRLELLPsaE............................................spvrwLEQPeshqrlAGPgC...KAGL..............SPAEPllSRAGFSPDSSKADsdaassgGSDSKKKKRYRPRDY..............TVNLDG.QVA
  423-  532 (147.46/56.72)	KPVRLKE......RKLTFDP..................................mTRQIKPLTQKEP.....V.RA......DSP.VHMEQQS.RTELDKQEAKASLQSPFEQ..TNWKELSRNEIIQ.......SYLSRQSSLLSSSGA.QTPGAHhfmseylKQEESTRQGA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19896 with Med26 domain of Kingdom Metazoa
Unable to open file!