<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19809

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMCDLRRPAAGGMMDLAYVCEWEKWSKSTHCPSVPLACAWSCRNLIAFTMDLRSDDQDLTRMIHILDTEHPWDLHSIPSEHREAITCLEWDQSGSRLLSADADGQIKCWSMADHLANSWESSVGSLVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRKDKFPAITHLKFLARDMSEQVLLCASSQTSSIVECWSLRKEGLPVNNIFQQISPVVGDKQPTILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFHDGSVHIVHRLSLQTMAVFYSSAAPRPVDEPAIKRPRTAGPAVHFKAMQLSWTSLALVGIDNQGKLSVLRLSPSMGHPLEVGLALRHLLFLLEYCMVTGYDWWDILLHVQPSMVQSLVEKLHEEYTRQTAALQQVLSTRILAMKASLCKLSPCTVTRVCDYHTKLFLIAISSTLKSLLRPHFLNTPDKSPGDRLTEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSLLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPASEPDEALVDECCLLPSQLLIPSLDWLPASDGLVSRLQPKQPLRLQFGRAPTLPGSAATLQLDGLARCVCPCTGPQTHTALSSMPGPGTPPQVHTAPSSMPCPRTPKSTWLPPPCPALGPLNPHGSFFPVPCPRTPPQIHTAPSSMPCPRTPKSTWLPPPCLALGPLNPHGSFLPVPCPGTPKSTRLRQLRPSRFPLAPSPSGVLCRWHELPHTHGHQCFCSPTCFFFFFPNSLALSPRLECSGAISAHCNLCLLGSNDSPASAS
Length970
PositionTail
OrganismCallithrix jacchus (White-tufted-ear marmoset)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy0.039
Instability index50.58
Isoelectric point8.04
Molecular weight106142.16
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19809
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     338.73|      44|      44|     795|     838|       1
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  745-  792 (46.62/16.35)	.....KQPLRLQFGRAPT...LPGSaatlqldglarcvCPCTGP.QTHTALSSMPGP
  795-  838 (103.17/45.41)	PPQVHTAPSSMPCPRTPKSTWLPPP.............CPALGPLNPHGSFFPVPCP
  841-  884 (100.22/43.90)	PPQIHTAPSSMPCPRTPKSTWLPPP.............CLALGPLNPHGSFLPVPCP
  887-  912 (41.94/13.94)	P................KSTRLRQL.............RPSRFPLAPSPS..GVLCR
  921-  954 (46.78/16.43)	GHQCFCSPTCF.FFFFPNSLALSPR.............LECSGAISAH.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.14|      36|      40|     422|     461|       2
---------------------------------------------------------------------------
  422-  461 (55.04/39.14)	PRTAGPAVHFKAMQLSWTslALVGIDNQGKLsvLRLSPSM
  464-  499 (64.09/34.82)	PLEVGLALRHLLFLLEYC..MVTGYDWWDIL..LHVQPSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.52|      35|      40|     607|     646|       3
---------------------------------------------------------------------------
  562-  633 (43.53/24.04)	SLLRP.H.FLntpdkspgdrlteicakitdvdidkvminlkteefvlDMNTLQALQQLLQWVGDFVLYLLASLP
  637-  674 (51.00/29.94)	SLLRPgHsFL....................................rDGTSLGMLRELMVVIRIWGLLKPSCLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.24|      27|     132|      22|      48|       5
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   22-   48 (53.17/32.13)	EKWSKSTHCPSVPLACAWSCRNLIAFT
  157-  183 (49.06/29.03)	EKFSRVKFSPSLTLFGGKPMEGWIAVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.78|      25|      44|      71|      96|       7
---------------------------------------------------------------------------
   71-   96 (43.93/29.98)	WDlHSIPS.EHREAITCLEWDQSGSRL
  118-  143 (40.85/23.26)	WE.SSVGSlVEGDPIVALSWLHNGVKL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19809 with Med16 domain of Kingdom Metazoa
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