<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19792

Description Mediator of RNA polymerase II transcription subunit like (Fragment)
SequenceMWTNVFKIGGLHQISWFQFLPHESDLNPLHDKSTKLEQKEAATLLVLSSHLQLQKEGFLSTWTNSFVGPWDPSQGLHNPNEKIKLWLFLPGRYSSVIESAQAAVSRLRVLASGIWLAPGDSEEVAVALSQALRNRIERGLTGLSYMRFGDVFSKYHPFSQSEELFRRGQPVVEFIFAATEEAIFVHVLISAKHLRALSTRDMEKILSRSSNHSGDRLPVIVSPHGMRGRVSGCCPSDLVQQVYLSSSKVRTSNGIVGLPCNGSQVPGCQVRGQSCYVEVTLGFPTTGNDKVLPRNSNLKKNFPENHNTESSAMTSGGQKGSPDQSSVYERTFIYPVEAVLVPVLQTSFARSSLKRFWLQNWIGPSLIGSSFFMQCAGERDSVDGSWIEGNGIRSEHDYHSSGNSNSSSISSLSSTSSDSDYPMAGGVCELEADADSLTCRQSGLSSSDQLPINGSKSGCKRPRTGIAESFGQAVTNGPMQDAYGSVEVNNSVITGVANDVGSQWDWDDDGRGVCVDIQALLSEFGGFGDFFENDVLPFGEPPGTAESQALMFSMPDSGDLGSSPCTAMMDVADQMLLPAGFPSFDNFDPPIVTMEESLGKNQELIKNAVPSGAANCTPASSAGEFVHLVKAEALMTFAPEYGAVENPTSEFSTSIFRRPYIPKSREVESANSSSESYVYCATPPSSPCLDRSDDKPGMGVNSKAHGRQDSSANLHPTNFYTIVERGKEQNEKRLIAGNNGIVTHKVAAPSSFSGFNYTNAVKSVQKKMNEATFETESFFMAMGIVIATEVECLVFQAYTCRIRHTLLSSCGHPPMGTGRLTGSSFLNQLHGDPNSVSDNVFSKYEVKKKESIPVRIAGDIDGELLEGPLNAPVGVWRSVGIPKGAKPTMSPSMEICPSLPSLPSEEGMLSYGQRQPLQEFLDGLALLVQQATSFVDVALDADCGDGPYGWLALQEQWRRGFSCGPSMVHAGCGGSLASCHSLDIAGVDLVDPLLADVHASDVIGLLQSDIKTALRSSFGTLDGPLSVTDWCKGRSQSGDAGTMGDGFSTELTGGECRDSSGTVTLPAGESLSPSQSSTVGSSCLKDGVRVDETSQWRSNQETSASETEQQLGFRLRPTLFVLPLPAILVGYQDDWLKTSASSLQLWEKAPLEPYALQKHMTYCVVCPDIDPLTTAAADFFQQL
Length1183
PositionKinase
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.08
Grand average of hydropathy-0.251
Instability index47.81
Isoelectric point5.05
Molecular weight127615.57
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19792
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     483.02|     115|     122|     619|     740|       1
---------------------------------------------------------------------------
  522-  609 (90.68/39.44)	..............................SE..FGgfG.DFFENDVLPFGEPPG....TAESQ.ALMFSM...PDSGdlGSSPCTAMMDVADQMLLPA...GF.PSFDNF..DPP.IVTMEE.SlGKNQELiKNAV......
  619-  740 (186.02/103.06)	ASSAGEFVHLVKAEALmtfapeyGAVENPTSE..FS..T.SIFRRPYIPKSREVE....SANSS.SESYVY...CATP..PSSPCLDRSDDKPGMGVNSKAHGRQDSSANL..HPTNFYTIVE.R.GKEQNE.KRLIAGN.NG
  746-  862 (136.54/65.32)	VAAPSSFSGFNYTNAV.......KSVQKKMNEatFE..TeSFFMAMGIVIATEVEclvfQAYTC.RIRHTLlssCGHP..PMG.....TGRLTGSSFLNQLHGDPNS...V..SD.NVFSKYEvK.KKESIP.VR.IAGDiDG
  865-  934 (69.78/28.31)	.........................LEGPLNA...P..V.GVWRSVGIPK.........GAKPTmSPSMEI...C.....PSLPSLPSEEGMLSYGQRQPLQEFLDGLALLvqQATSF.........................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     409.63|     132|     155|     168|     322|       2
---------------------------------------------------------------------------
  174-  316 (205.28/151.38)	FIFAAteEAIFVHVLISAKHLRALSTRDMEKILSRSSNHSGdrlpVIVSPHGMRGRVSGC.CPSDLVQ..QVYLSSSKvRTSNGIVGLPCNGSQvPGCQVRGQSCYVEV...TLGFPTTG...NDKvLPRN...SNLKKnfPENHNTES..SAMTSG
  332-  477 (204.35/102.26)	FIYPV..EAVLVPVLQTSFARSSLKRFWLQNWIGPSLIGSS....FFMQCAGERDSVDGSwIEGNGIRseHDYHSSGN.SNSSSISSLSSTSSD.SDYPMAGGVCELEAdadSLTCRQSGlssSDQ.LPINgskSGCKR..PRTGIAESfgQAVTNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.83|      23|     589|     478|     504|       3
---------------------------------------------------------------------------
  478-  504 (37.51/26.72)	PMQdaygSVEVNNSVI.TGVANDVGSQW
 1073- 1096 (39.33/18.92)	PSQ....SSTVGSSCLkDGVRVDETSQW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19792 with Med13 domain of Kingdom Viridiplantae
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