<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19790

Description Mediator of RNA polymerase II transcription subunit 26b
SequenceMAKKSGSLDNWRNYFRTSNSDIFDIIEQAILVAASDCPQEFRLRRDKIAETLFSCKLAKCLRCDSVVLSVPKDGGGDKDDDDEGCKIDGYEFEAGGSKESKVNSSRDDQVDMNVNQMSNYSYGEAEALTDEIEEESQIVGEVLRIKEILDNYQDESDSGLFDSLRRVQLMALSVDTLRATEIGKSVNALRKHALKEIRHLARTLIDVWKDMVDEWVNATAAIGDAEGTPESVNPSVVDEEEEGLPSPPLDEVFFATQTTMELSQFFDGMDDDGNPRNSSGEFNKNRQTGRKPSRENQNVPKWNQQVPHESYVPAKDKNGEEMKKQGPVLKKQAALVKPHRPSNTESGLVRPAKVNVEQKVNNERKFQEKSEKATVQRKPVPVQQDKSKCLDDAARLEAAKRKLHERYQQAENAKRQRTIQVMELHDLPKQGPGGHRNANMRPGNHNRHWANGRR
Length454
PositionUnknown
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.05
Grand average of hydropathy-0.952
Instability index48.17
Isoelectric point5.69
Molecular weight51248.48
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19790
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.76|      19|     103|     321|     343|       1
---------------------------------------------------------------------------
  321-  343 (28.45/25.27)	EMKKQGPVLKKQAALvkphRPSN
  426-  444 (38.31/22.30)	DLPKQGPGGHRNANM....RPGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.38|      53|     103|     108|     164|       2
---------------------------------------------------------------------------
  108-  164 (79.66/70.79)	DQVDMNVNqmSNYSYGEAEALTDEI......EEESQIVGEVLriKEILDNYQDESD.SGLFDSL
  210-  269 (83.72/60.18)	DMVDEWVN..ATAAIGDAEGTPESVnpsvvdEEEEGLPSPPL..DEVFFATQTTMElSQFFDGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      22.95|       6|     187|      80|     107|       3
---------------------------------------------------------------------------
   73-   78 (12.05/21.65)	DGGGDK
   93-   98 (10.89/ 6.75)	EAGGSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19790 with Med26 domain of Kingdom Viridiplantae
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