<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19789

Description Mediator of RNA polymerase II transcription subunit 33A like
SequenceMGSSGGGGEWELGGERVVEGREQRKEAWAMEVAKCVGSALPSPELAQFLVSQLCLPNNHQDPSLWKFLHQALSSALLSPFHVLALLTSRVIPHRWSQPEAYRLYLEILSRYAFSFVGLGTNGYREKIIISVDSTLQLSQTYGVQVLELGLALVLSFFSILIRLIDSTLCDWGLQMTSADKASEVLRSDDSQNMDVDSKEIQIYERNDHRDRLRKSNSFLAFEVLGKLMENRKAMVLLRLVYLNMPEKFNGLLQRMQFLEAHTLASPNLKPTHQLVVKLSASIRGAMDFEYHLNKRQFIGMLIYIRSYKPVLCYNSESGRFACWVPFDINMEDAMDGKQFPVTSAIDILTETINTLKVFNRASWQETFLALWLSALRLVQRERDPLEGPVPHLEARLCVLLSITPLAIARVLEDNATFCSFPGCTASRDMECGCGHGNDDNDHALRKQGLISSLQVLGHFTSLLCPPTSVVNAANIAAAKATSFMFNSKNVKDGITGGGCSDALVKAGGDMRHLIVEACIARKLIDTSAYFWPGYVSALVTSVSEQSPLQKSPWSTFMEGAPLTSPLINALMTTPASSYAEVEKLYYLALNGSEEEKSAAAKILCSASLSRGWNLQEHVVHFVVKLLSPPIPPNFKGSRSHLVEYMSMLSAILFGASSIDTVHILSLHGVVPEVAASLLPLCETFGSLVPTSGHKLSIGDESSIYMVFSSAFLFLLRLWKFYRPPLEQCVTGRGGALRGELTLEYLLLLRNSRIRPHNSGAHDEMDSSSNTHGSAMNEPIYIDSYPKLRAWYCQNKSCIASTLSGLCSGNPVHQVANKILNMICTKMTTSGTMSSDSSMLSSSRVGCPLASTGEDAYQRPVIPAWEVLEAIPYVLEAILTACAHGRISSRDLTTGLRDLVDFLPASLAAIISYFSAEITRGIWKQVSMNGIDWPSPAANLTSVESEMREILAAAGVNVPSFLTGVSPAMLPLPMADLVSLTITFKLDKRLEYIHAVAGPALENCALGCSWPSMPIIGSLWAQKVRRWHDFIVVSCSRSVFRQNLEAVAQLMRSCFASFLGSLHVSASPMTSQNGVNGLLGSFISAPGLQPRVAPGFLYLRSCRTMHHVQHVNHVIVELVANSSRELAARWVSIDSPRLKSTQASLAVAIARAKEVATLGASLLCVAGGLQLVQELYQETIPTWLLSAREEKHGNQANAVSRILEGYSMAYLLVLSGALIWGVSAKPPSLGSRRLRGVGIHMDFVVGVLEGNISVSCDPATWKAYVSCLVGLVVSFAPVWIREVKQETLRKLSNGLRGWHECELALSLLERGGVAAMGSAAELVNVI
Length1325
PositionTail
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.08
Grand average of hydropathy0.130
Instability index45.65
Isoelectric point7.18
Molecular weight145023.92
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19789
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.25|      27|      56|    1211|    1239|       1
---------------------------------------------------------------------------
 1211- 1239 (44.31/31.74)	LVLSGALIWGVSAKPPSLgsRRL.RGV.GIH
 1270- 1298 (41.94/23.59)	LVVSFAPVWIREVKQETL..RKLsNGLrGWH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.38|      22|      41|     949|     971|       2
---------------------------------------------------------------------------
  949-  971 (34.94/22.83)	ILAAAGVNVPSFLTGVS.PAMlPL
  992- 1014 (38.44/21.03)	IHAVAGPALENCALGCSwPSM.PI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.82|      12|      30|     711|     723|       3
---------------------------------------------------------------------------
  711-  723 (19.90/15.41)	FLFLLRLWKFyRP
  744-  755 (21.92/11.30)	YLLLLRNSRI.RP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     135.33|      34|      34|      34|      67|       5
---------------------------------------------------------------------------
   23-   59 (53.30/26.43)	QRKEAWAMevaKCVGSALPSPELAQFLVSQLCLPNNH
   60-   95 (54.04/26.89)	QDPSLWKF.lhQALSSALLSPFHVLALLTSRVIPHRW
  527-  547 (27.99/10.64)	...............SAYFWPGYVSALVTS.VSEQSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.32|      16|      36|     131|     146|       6
---------------------------------------------------------------------------
  131-  146 (27.71/17.30)	VDST.....LQL.SQTYGVQVL
  164-  185 (16.61/ 7.51)	IDSTlcdwgLQMtSADKASEVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.68|      21|      36|     623|     643|       7
---------------------------------------------------------------------------
  623-  643 (37.72/23.42)	VKLLS.PPIPPNFKGSRSHLVE
  661-  682 (31.97/18.60)	VHILSlHGVVPEVAASLLPLCE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.77|      47|     344|     461|     509|      10
---------------------------------------------------------------------------
  461-  509 (77.06/53.96)	SLLC...PPTSVVNAA.NIAAAK.ATSFMFNSKNVKDGITGGGCsdALVKAGGD
  803-  854 (70.71/43.30)	SGLCsgnPVHQVANKIlNMICTKmTTSGTMSSDSSMLSSSRVGC..PLASTGED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.03|      14|      29|     865|     878|      13
---------------------------------------------------------------------------
  865-  878 (21.91/12.97)	EVLEAIPYVLEAIL
  897-  910 (22.13/13.18)	DLVDFLPASLAAII
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19789 with Med33 domain of Kingdom Viridiplantae
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