<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19778

Description Pre-mRNA-processing protein like
SequenceMANNPQSSGAQPLRPPAVGSMVPQTFSPSFTMQFRPMIPSQQGQPFVHAASASQQFRPVGQGISSSNIGIPSNQSQAPQYSQPMQQLPPRPALPAHGQSIPMPYIQPSMPLTSSSPQSQQTAVPLNNHMHGLVGHGVPFSSFTAQHTVTASSQFQPSQMHAPVAQVGGQPWLSTGSQGGPLVTPMQQIAKQSSDMTVASPAVNVPSTAQQSSSDWQEHTSQDGRRYYYNKNTRQSSWEKPLELMTPIERADASTVWKEFTTQDGRKYYYNKVTKQSKWQVPEELKVAREQAEKPASQEAQSEISATSNSIEDVNVSSAEQLSAAVTSVSSISTSTITGLAFSPVPVTPVVAVNAAPVVVSGSSAFPVAPSTATSAVGVSSFGINVTPSPSAASGSAGVPAALVSTDATPMASFDNSSSHDVSNSLSGASMQDIEEAKKGMAVAGKINETPLEEKPVEDEILVYATKQEARNAFKALLESANVESNWTWEQAMRVIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRVRMKKAREEFTKMLEDCEELTSSTRWSKAISMFEEDERFKGIERPAEREDLFKNYLVDLQKKEKEKAQEEYRRNRLEYKQFLETCGFIKVNTQWRKVQDRLEDDERCSRLEKFDRFEIFQEYIRDLEKEEEEQRKIQKEQLKRAERKTRDEFRKMMEEHVAAGVLTAKTHWRDYCMKVKDSAPYQAVALNTSGSTPKDLFEDVAEELEKQYHEDKTRIKDAVKLGKVNITSTSPLEDFKAAILEDIGSPPVSDINMKLVFEDLLGRAREKEEKEAKKRLRLADDFNDLLCTIKEITASSVWDESIQLFEESSEYRLIGEESFAKEIFEEHVLRLQEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKDKEREKDKDKEREKEKGKERSKKDEAESENMDVSDSYGPREEKRREKDKDRKHRKRHHSPANDISSDKDENEESKKSRRHGSDRRKSRKHAYTPESDSESKHKRHKRDHRDGSRRNGGYEELEDGELGEDGEIR
Length1032
PositionUnknown
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.06
Grand average of hydropathy-1.006
Instability index63.07
Isoelectric point6.27
Molecular weight116892.86
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19778
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.29|      37|      38|     215|     251|       1
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  171-  194 (30.21/14.89)	WLSTGSQGG................P..LVTPMQQiakqsSD
  215-  251 (76.04/48.80)	WQEHTSQDGRRYYYNKNTRQSSWEKPLELMTPIER.....AD
  256-  292 (71.04/45.10)	WKEFTTQDGRKYYYNKVTKQSKWQVPEELKVAREQ.....AE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     154.70|      24|      24|     876|     899|       2
---------------------------------------------------------------------------
  876-  899 (39.15/19.47)	EEEKAKK.....E.....KEREEKEKRKEKEKKD
  900-  922 (34.78/16.38)	KEREKDK.....D.....KER.EKEKGKERSKKD
  923-  951 (27.06/10.91)	EAESENM.....DvsdsyGPREEKRREKDKDRKH
  955-  979 (26.28/10.36)	HHSPAND....iS.....SDKDENEESKKSRRHG
  981- 1009 (27.43/11.18)	DRRKSRKhaytpE.....SDSESKHKRHKRDHRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     452.98|      65|      65|     534|     598|       3
---------------------------------------------------------------------------
  467-  527 (78.99/47.90)	..................QEARNAF.........KALLES.A....NVESNWTWEQAMRVIINDKRYGALKTLG....ERKQAFNEYLGQRKKLEAE
  528-  595 (95.51/59.56)	ERR............vrmKKAREEF.........TKMLEDCE....ELTSSTRWSKAISMFEEDERFKGIERPA....EREDLFKNYLVDLQKKEKE
  596-  662 (88.54/54.64)	KAQ............eeyRRNRLEY.........KQFLETCG....FIKVNTQWRKVQDRLEDDERCSRLEK.F....DRFEIFQEYIRDLEKEEEE
  665-  739 (51.21/28.30)	KIQkeqlkraerktrdefRKMMEEHvaagvltakTHWRDYCM....KVKDSAPY.QAVAL.....NTSG.STP.......KDLFEDVAEELEK....
  740-  803 (57.38/32.65)	...................QYHEDK.........TRIKDAVKlgkvNITSTSPLEDFKAAILED.....IGSPPvsdiNMKLVFEDLLGRAREKEEK
  804-  870 (81.35/49.56)	EAK............krlRLA.DDF.........NDLLCTIK....EITASSVWDESIQLFEESSEYRLIGEES....FAKEIFEEHVLRLQEKAKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     192.16|      29|      30|      17|      45|       4
---------------------------------------------------------------------------
   17-   45 (60.15/33.71)	A...VGSMVPQTF.SPSFTMQFRPM...IP.SQQ.GQP
   50-   71 (21.29/ 7.22)	A...SAS...Q.........QFRPVgqgIS.SSNiGIP
   72-   94 (39.18/19.42)	S...NQSQAPQYS.QPMQQLPPRPA...L........P
   95-  124 (33.22/15.36)	A...HGQSIPMPYiQPS..MPLTSS...SPqSQQtAVP
  129-  156 (38.33/18.83)	MhglVGHGVP..F.S.SFTAQ.HTV...TA.SSQ.FQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     128.68|      19|      19|     369|     387|       5
---------------------------------------------------------------------------
  324-  343 (17.15/ 7.02)	AVTSVSSISTST..ItGL..AFSP
  348-  366 (24.24/13.11)	PVVAVNAAPVVV..S.GS..SAFP
  369-  387 (29.47/17.59)	PSTATSAVGVSS..F.GI..NVTP
  389-  409 (19.86/ 9.34)	PSAASGSAGVPA..A.LVstDATP
  412-  432 (18.61/ 8.27)	SFDNSSSHDVSNslS.GA..SMQD
  433-  450 (19.34/ 8.90)	IEEAKKGMAVAG....KI..NETP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19778 with Med35 domain of Kingdom Viridiplantae
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