<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19778

Description Pre-mRNA-processing protein like
SequenceMANNPQSSGAQPLRPPAVGSMVPQTFSPSFTMQFRPMIPSQQGQPFVHAASASQQFRPVGQGISSSNIGIPSNQSQAPQYSQPMQQLPPRPALPAHGQSIPMPYIQPSMPLTSSSPQSQQTAVPLNNHMHGLVGHGVPFSSFTAQHTVTASSQFQPSQMHAPVAQVGGQPWLSTGSQGGPLVTPMQQIAKQSSDMTVASPAVNVPSTAQQSSSDWQEHTSQDGRRYYYNKNTRQSSWEKPLELMTPIERADASTVWKEFTTQDGRKYYYNKVTKQSKWQVPEELKVAREQAEKPASQEAQSEISATSNSIEDVNVSSAEQLSAAVTSVSSISTSTITGLAFSPVPVTPVVAVNAAPVVVSGSSAFPVAPSTATSAVGVSSFGINVTPSPSAASGSAGVPAALVSTDATPMASFDNSSSHDVSNSLSGASMQDIEEAKKGMAVAGKINETPLEEKPVEDEILVYATKQEARNAFKALLESANVESNWTWEQAMRVIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRVRMKKAREEFTKMLEDCEELTSSTRWSKAISMFEEDERFKGIERPAEREDLFKNYLVDLQKKEKEKAQEEYRRNRLEYKQFLETCGFIKVNTQWRKVQDRLEDDERCSRLEKFDRFEIFQEYIRDLEKEEEEQRKIQKEQLKRAERKTRDEFRKMMEEHVAAGVLTAKTHWRDYCMKVKDSAPYQAVALNTSGSTPKDLFEDVAEELEKQYHEDKTRIKDAVKLGKVNITSTSPLEDFKAAILEDIGSPPVSDINMKLVFEDLLGRAREKEEKEAKKRLRLADDFNDLLCTIKEITASSVWDESIQLFEESSEYRLIGEESFAKEIFEEHVLRLQEKAKEKERKREEEKAKKEKEREEKEKRKEKEKKDKEREKDKDKEREKEKGKERSKKDEAESENMDVSDSYGPREEKRREKDKDRKHRKRHHSPANDISSDKDENEESKKSRRHGSDRRKSRKHAYTPESDSESKHKRHKRDHRDGSRRNGGYEELEDGELGEDGEIR
Length1032
PositionUnknown
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.06
Grand average of hydropathy-1.006
Instability index63.07
Isoelectric point6.27
Molecular weight116892.86
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19778
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.29|      37|      38|     215|     251|       1
---------------------------------------------------------------------------
  171-  194 (30.21/14.89)	WLSTGSQGG................P..LVTPMQQiakqsSD
  215-  251 (76.04/48.80)	WQEHTSQDGRRYYYNKNTRQSSWEKPLELMTPIER.....AD
  256-  292 (71.04/45.10)	WKEFTTQDGRKYYYNKVTKQSKWQVPEELKVAREQ.....AE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     154.70|      24|      24|     876|     899|       2
---------------------------------------------------------------------------
  876-  899 (39.15/19.47)	EEEKAKK.....E.....KEREEKEKRKEKEKKD
  900-  922 (34.78/16.38)	KEREKDK.....D.....KER.EKEKGKERSKKD
  923-  951 (27.06/10.91)	EAESENM.....DvsdsyGPREEKRREKDKDRKH
  955-  979 (26.28/10.36)	HHSPAND....iS.....SDKDENEESKKSRRHG
  981- 1009 (27.43/11.18)	DRRKSRKhaytpE.....SDSESKHKRHKRDHRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     452.98|      65|      65|     534|     598|       3
---------------------------------------------------------------------------
  467-  527 (78.99/47.90)	..................QEARNAF.........KALLES.A....NVESNWTWEQAMRVIINDKRYGALKTLG....ERKQAFNEYLGQRKKLEAE
  528-  595 (95.51/59.56)	ERR............vrmKKAREEF.........TKMLEDCE....ELTSSTRWSKAISMFEEDERFKGIERPA....EREDLFKNYLVDLQKKEKE
  596-  662 (88.54/54.64)	KAQ............eeyRRNRLEY.........KQFLETCG....FIKVNTQWRKVQDRLEDDERCSRLEK.F....DRFEIFQEYIRDLEKEEEE
  665-  739 (51.21/28.30)	KIQkeqlkraerktrdefRKMMEEHvaagvltakTHWRDYCM....KVKDSAPY.QAVAL.....NTSG.STP.......KDLFEDVAEELEK....
  740-  803 (57.38/32.65)	...................QYHEDK.........TRIKDAVKlgkvNITSTSPLEDFKAAILED.....IGSPPvsdiNMKLVFEDLLGRAREKEEK
  804-  870 (81.35/49.56)	EAK............krlRLA.DDF.........NDLLCTIK....EITASSVWDESIQLFEESSEYRLIGEES....FAKEIFEEHVLRLQEKAKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     192.16|      29|      30|      17|      45|       4
---------------------------------------------------------------------------
   17-   45 (60.15/33.71)	A...VGSMVPQTF.SPSFTMQFRPM...IP.SQQ.GQP
   50-   71 (21.29/ 7.22)	A...SAS...Q.........QFRPVgqgIS.SSNiGIP
   72-   94 (39.18/19.42)	S...NQSQAPQYS.QPMQQLPPRPA...L........P
   95-  124 (33.22/15.36)	A...HGQSIPMPYiQPS..MPLTSS...SPqSQQtAVP
  129-  156 (38.33/18.83)	MhglVGHGVP..F.S.SFTAQ.HTV...TA.SSQ.FQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     128.68|      19|      19|     369|     387|       5
---------------------------------------------------------------------------
  324-  343 (17.15/ 7.02)	AVTSVSSISTST..ItGL..AFSP
  348-  366 (24.24/13.11)	PVVAVNAAPVVV..S.GS..SAFP
  369-  387 (29.47/17.59)	PSTATSAVGVSS..F.GI..NVTP
  389-  409 (19.86/ 9.34)	PSAASGSAGVPA..A.LVstDATP
  412-  432 (18.61/ 8.27)	SFDNSSSHDVSNslS.GA..SMQD
  433-  450 (19.34/ 8.90)	IEEAKKGMAVAG....KI..NETP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19778 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQHTVTASSQFQPSQMHAPVAQVGGQPWLSTGSQGGPLVTPMQQIAKQSSDMTVASPAVNVPSTAQQSSSDWQEHTSQDGRRYYYNKN
2) KAKEKERKREEEKAKKEKEREEKEKRKEKEKKDKEREKDKDKEREKEKGKERSKKDEAESENMDVSDSYGPREEKRREKDKDRKHRKRHHSPANDISSDKDENEESKKSRRHGSDRRKSRKHAYTPESDSESKHKRHKRDHRDGSRRNGGYEELEDGELGEDGEIR
3) PSFTMQFRPMIPSQQGQPFVHAASASQQFRPVGQGISSSNIGIPSNQSQAPQYSQPMQQLPPRPALPAHGQSIPMPYIQPSMPLTSSSPQSQQTAVPLNNHMH
4) VPEELKVAREQAEKPASQEAQSEISATSNSIED
144
867
28
280
231
1032
130
312










Molecular Recognition Features






MoRF SequenceStartStop




1) FTMQF
2) GYEELEDGELGEDGE
3) KHAYT
4) KHKRHKRDHR
30
1016
987
999
34
1030
991
1008