<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19755

Description Mediator of RNA polymerase II transcription subunit 15a like
SequenceMDYTLVDSDSNFDVNDWLAATMFEPEVGNSGIADAGIQVSALNPSNLSQLENSSGKLAEKSYQNEASKPVSMSRTCQRVIPMESLYHHSSGTAASSSAMTQSVKTESTGQGSSVQSMSAYSHEPADNLVGQTMQSNIFVNSHSELPRSQSLQQAVLQRQHQQLQHQLLNQNVQRPYIQSSSMQSKIQYYHHPQQEQHNLSLPTEVGSSQQTISTAVQDQRRVGQYPNATILQQNHHVRMQEKQHQLQPYQQNMSTTFKQSSGLQSNVTGLQQPQQQKLIRARLDVLNMQTQQHALHTLQKPEVAGPQKTVQLTSWPIQLDKLPGLQNQRNSLQESMQKRHQTSAALLPQTGIIDHPKQLEQSQRVLPEGSSASVGSTSQTRLDHWHDQAYQQLESAREMFLPEAIDLYNMARELCLQSTSAELAAKYDKNRIFIEKTIRFLKMARADIDHQCSKDKFYHYLKLITQYFNLIRSRNLVSVQQHRQQQTPGSQSENPQPQQQINTKLQLHPVNRGLTGAPACSPQLSMQQAIPSSQENKTNFNHKGSSSGSEPNNSWSPWQHGSTHHLTMRRLQQTNTLHDSSLIGTEQRNSVDPLLHNGIRSLRPNMLNTLQQTNFSHMTTVNSLDPTISPRPSSSTTPFLNLKQQPIQMMQTQTLKQSLQQPSIEKKKKQVSKKKMHEIIEPKVGQVIGFSSEMLKEHHSVSQHRQYSPESLRPSTHLNSGSTQTSQHSSQQTDQKVLLSPLSKAGTHLQCAASQFTTPLPSTPLTPSYLLVDLEKNSIGISPLSATNNTEHIETPDILASSMLEEFTGPEDNQETNTKEPSLKCLLEVVETISPRALSASVEDIGTVIDLTDRISVITASESRVAIGDDLAADTSHRLQGRNFSLDCGSTSSKSMKRSRSMRTIALDLLSSPFNENDGLEGPSCQTIDMDSTATSRIKRPRTELNGTLLEEIKEINQNLVETVIDVVLNSTEGAVKAGFGEGTIVRCSYNALGLGGNFNQHYASARMELSILPVKLLVPADYPKSSPIFLNTPHTSWSEAEATENLSEKAKLRFCLSLRKLSQPMSLGEMARTWDVCARTVLSEFAQSMGGGSFNSTYGTWENCIAA
Length1108
PositionTail
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.05
Grand average of hydropathy-0.645
Instability index57.98
Isoelectric point7.00
Molecular weight123211.46
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19755
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     191.48|      29|      32|     697|     725|       1
---------------------------------------------------------------------------
  164-  184 (28.01/ 8.93)	..........QHQL...LNQNVQRP..YI.QSSSMQ.S
  189-  210 (37.30/14.25)	YHHP......QQEQ...HN.LSL.PT....EVGSSQ.Q
  233-  265 (36.56/13.82)	QNHHVrmqeKQH.Q...LQPYQQNMSTTFkQSSGLQ.S
  697-  725 (53.85/23.71)	EHHSV....SQHRQ...YSPESLRPSTHL.NSGSTQ.T
  727-  757 (35.75/13.36)	QHSS.....QQTDQkvlLSPLS.KAGTHL.QCAASQfT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     162.98|      32|      32|     589|     620|       2
---------------------------------------------------------------------------
  553-  581 (53.85/28.03)	NSWSPWQHGSTHHLT...MRRLQQTNTLHDSS
  589-  620 (57.49/30.45)	NSVDPLLHNGIRSLRPNMLNTLQQTNFSHMTT
  622-  652 (51.65/26.56)	NSLDPTISPRPSSSTTPFLN.LKQQPIQMMQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     145.91|      33|      33|      84|     116|       3
---------------------------------------------------------------------------
   48-   81 (44.45/19.45)	SQLENSSGKLAEKSYQNEASKPVSMSRTcQRVIP
   84-  116 (50.90/23.26)	SLYHHSSGTAASSSAMTQSVKTESTGQG.SSVQS
  118-  150 (50.56/23.06)	SAYSHEPADNLVGQTMQSNIFVNSHSEL.PRSQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.61|      27|      41|     861|     900|       4
---------------------------------------------------------------------------
  874-  900 (47.67/38.61)	DTSHRLQGRNF.SLDCGSTSSKSMKRSR
  915-  942 (43.94/15.93)	NENDGLEGPSCqTIDMDSTATSRIKRPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.35|      27|      32|     342|     368|       5
---------------------------------------------------------------------------
  306-  347 (25.62/11.80)	PQKTVqlTSWPIQLDklpglQNQRnSLQEsmqkrhqTSAALL
  348-  374 (49.73/30.70)	PQTGI..IDHPKQLE.....QSQR.VLPE.......GSSASV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.30|      20|      41|     474|     494|       6
---------------------------------------------------------------------------
  474-  494 (33.64/20.63)	RNL.....VSVQQHRQQQTPGSQsEN
  512-  536 (32.66/15.65)	RGLtgapaCSPQLSMQQAIPSSQ.EN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19755 with Med15 domain of Kingdom Viridiplantae
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