<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19753

Description Mediator of RNA polymerase II transcription subunit like
SequenceMMAMHMQMLDQHLHCPTFGTQRLLSQATTNVSGEAVTNMRYSPITYPSVLGEPLHGEDLAASIQRGSLDWERALRCIRHGLRATPSSEWWKRVLLVAPCYRTTQGPSLGAVFTSDMICEATIDRIVELLKLTNSETNCWQEWLVFSDIFFFLMKNGCIDFVDFVDKLVLRFAEGDQNILRTNHVTWLFAQIIRVELVMSALNTDPRKVETTRKILSFHKEDRNSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQASKGDRMMDYMNLDDRSIGMFWVVSYTMAQPACETVMNWLTSAGVSELPGSNLQSNERLMVMREVSPLPISLLSGFSINLCSKLAYQMEESMFSGQVVPNVAMVETYVRLLLLAPHSLFRSQLSHLSQRNPAILNKPGVSVLVLEILNYRLLSLYRYQGKSKTLMYDITKIISTFKGERGDHRIFRLAENLCMNLILSLREFFFVKKEGKGPTEFTETLNRITITTLAIIIKTRGIVEAEQMLYFPTMLEQILTTSQHTWSEKTLRHFPSILRDALNGRADKRGLSIQLWQQAETTVLNQCTKLLSPSADPGYGMTYISHSFPQHRKYLCTGAWILMHGHLENINYTNLGRVLREFSPEEVTDNIYTMVDVLLHHTHLELQHGHSLQELILKASTNLAYFIWTNDLLPLDILLLALIDRDDDPHALRIVINLLERLELQQRVKFYIINRGPPEHWLSSGTFKPVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIIYRLIENDATDVADRVLQLYSPFLHYYPLNFTFVRDILAYFYGHLPGKLIFRILSVLDVKKIPFSESFPQHINSSNAANCPPLDYFATLLLGLVNNVIPPLNNSSKSGSLGDTSSNSLRAHTKTSSTTQPGPTNASEGQKAFYQIQDPGTYTQLMLETAVIEILSLPISAFQIVSSLIQIVVHIQPTLVQSSNGLHGASNGVGSGSVLPTSPSGGSTDSLSANRSIPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPTDFHKQLYVEASRLIKESWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFCNLPQEWLEEAHLIINNLRPVTSVAVLRIAFRIMGPLLPRLANAQALFNKTLSLLLNIMVDMFGKNSQPSPPVEASDIADLIDFLHHVIHYEGQLGPVQPNSKPRPEVLALCGRAFENLRPDVQHLLSHLKTDTNSSIYAATHPKLVQNPL
Length1251
PositionTail
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.08
Grand average of hydropathy-0.062
Instability index38.78
Isoelectric point6.58
Molecular weight141028.64
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19753
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.06|      37|     325|     705|     764|       2
---------------------------------------------------------------------------
  728-  764 (68.29/68.28)	WLSSGTFKPVELQKALGNHL...SW..KERYPTFFDDIAARL
 1055- 1096 (54.76/20.87)	WLTDGKRSLGELDSAVGYALldpTWaaQDNTSTAIGNIVALL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     247.89|      82|     152|     388|     490|       3
---------------------------------------------------------------------------
  388-  490 (119.91/115.87)	PHSLFRSQLSH........LSQRNpailNKPGVSVLVLEILNYRLLS.LYRYQGKSKTLMYDITKIISTFkgerGDHRIFrlaenLC................MNLILSLREFffvkkegkGPTEFTE
  530-  636 (127.98/79.02)	QHTWSEKTLRHfpsilrdaLNGRA....DKRGLSIQLWQQAETTVLNqCTKLLSPSADPGYGMTYISHSF....PQHRKY.....LCtgawilmhghleninyTNLGRVLREF........SPEEVTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.39|      19|      43|     129|     148|       9
---------------------------------------------------------------------------
  129-  148 (32.00/24.60)	LKLTNSETNCWQ....EWLvFSDI
  169-  191 (28.39/16.55)	LRFAEGDQNILRtnhvTWL.FAQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.96|      20|      44|     809|     829|      11
---------------------------------------------------------------------------
  809-  829 (31.84/23.55)	LAYFYGHLPGkLIFRILSVLD
  854-  873 (35.12/21.32)	LDYFATLLLG.LVNNVIPPLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.17|      19|     539|     638|     656|      12
---------------------------------------------------------------------------
  638-  656 (35.78/21.86)	IYTMVDVLLHHTHLELQHG
 1178- 1196 (35.39/21.55)	IADLIDFLHHVIHYEGQLG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19753 with Med23 domain of Kingdom Viridiplantae
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