<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19752

Description ATP-dependent DNA helicase
SequenceMAATGAILEELLNVEVELQDVQDQIKILLDRQEKLYERQSELKVLLEDCEASGSPRSDGTTVSVENCSGPFEWDSQADDVRFNIFGISKYRANQREIINAIMSQRDVLVIMAAGGGKSLCYQLPAILLDGVVLVVSPLLSLIQDQVMGLAALGIPAFMLTSTTAKEDEKYIYKVLEKGEGDLKILYVTPEKISKSKRFMSKLEKCHHGGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATKKVQADLIEMLHIPKCIKFVSTVNRPNLYYMVREKSSVAKMVIDEIAEFIQSSYPNKESGIVYCFSRKECELVAKELRERGISADYYHADMDVNAREKVHQRWSNSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRECRRSAFFRHFAEPLQDCNGMCDNCSVSADIKEMDVSGQAKFLISLLQDMRDSDQRITMLQLVDKMKVKHKDIGSEIKRDEMEQLVIQLTVDHVLKEEFQHTAYSTNAYVTIGPLAKQVLQGKKIVKLEVSGKQKGGVRKASKRSLTSSGLEYKLDELRKELSSIHGGIFPHSVLSTEQITSLSAQRPMSIEQLEKIIGKLKTEKYGSRILEEIENYVSQNPPDSDLVDEGQESGSRTTKRPKTEKARVVIESSEEEA
Length708
PositionUnknown
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.07
Grand average of hydropathy-0.359
Instability index48.13
Isoelectric point6.37
Molecular weight79812.63
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
DNA helicase activity	GO:0003678	IEA:UniProtKB-EC
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19752
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.09|      53|     130|     503|     556|       3
---------------------------------------------------------------------------
  503-  556 (85.86/48.16)	SDQRITMLQLVDKM..KVKHKDIGSEIkRDEMEQLVIQLTVDHVLKEEFQHTAYST
  634-  688 (84.23/43.69)	SAQRPMSIEQLEKIigKLKTEKYGSRI.LEEIENYVSQNPPDSDLVDEGQESGSRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     191.14|      58|     155|      18|      78|       4
---------------------------------------------------------------------------
   18-   78 (87.77/68.38)	LQDVQDQIKILLDRQEKLyERQSELKVLLEDCEASGspRSDGTTVSVENCSGPFEWDSQAD
  175-  232 (103.36/68.03)	LEKGEGDLKILYVTPEKI.SKSKRFMSKLEKCHHGG..RLSLISIDEAHCCSQWGHDFRPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.42|      38|     125|     284|     326|       6
---------------------------------------------------------------------------
  284-  326 (62.32/51.18)	LYYMVREKSSVAKMVIDEiaefiQSSYPNKESGIVYCFSRKEC
  415-  452 (71.11/46.68)	LYFRPGDVPRQSSMVFYE.....NSGLQNLYDIVRYCQSKREC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19752 with Med34 domain of Kingdom Viridiplantae
Unable to open file!