<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19745

Description Mediator of RNA polymerase II transcription subunit like
SequenceMNPNKDSEEESPTVATSSSALEAAKGSEKADGGEEEAAENGEDPMEEDHPVNPAAVFCIRLKQPRSNLMHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFMEWSPTSCPRALLIANFHGRITIWTQPSQGLPNLVRDASCWHREHEWRQDIAVVTKWLSGVSPYRWLSSRSSNPASSKSTFEEKFLSQQPQAPAGWPNFLCVCSVFSSGSVQLHWAQWPPNQSGAASKWFCTSKGLLGAGPSGIMAADAIVTDDGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKASTSTGVPPSLNPPSWDGFASLAAYLFNWQEYFLSEAKQGKKHTDQDYSNMVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLKPVVLHQIFGNPTSTFGGQAPMQTVWVTTVNKCIQPTNDFKIHQAAVAGPCSDVRNTSDSGLEKTKRVCFDPFDLPSDVRTLARIVYSAHGGEIAVAFLLGGVHIFSGASFAPVDNYQINVGSAIAAPAFSSTSCCSASVWHDTSKDRTILKIIRVLPPAVPSSQAKTNSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRQLYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPAALVSEPWQETGEKLSLIDPETMAVEPALVLSIQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGGNRNMVASPTQNSTSPAASGQGGTANSTGSTQMQAWVQGAIAKISSTADGVPNSTPNPISGPSSFMPISINTGTFPGTPAVRLIGDCRFLHRLCQLLLFCFFFRRTQLRFIGGAQRNADTNMQKPQPGAPGKVEEISSVPTKPTSGMARSDEMQAARGGQAISGTKGPEEGPASRSRLGSGNAGQGYTFEEVKVLFLILLDLCRRTAGLSHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEEMGPADDPPKLSNSSDLLELNSLENCDIYDGANGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFAAPGPSTPPNQNEKEMWWISRWAYGCPMCGGTWVRVV
Length1236
PositionTail
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.08
Grand average of hydropathy-0.205
Instability index44.36
Isoelectric point6.02
Molecular weight133430.24
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19745
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     554.61|     182|     523|     154|     353|       1
---------------------------------------------------------------------------
  154-  353 (285.90/199.51)	ALLIANFHGRITIWTQPSQGlPNLVRdASCWHREHEWRQDI.AVV....TKWLSGVSPyRWLSSRSSNPAS..SKSTFE..EKFLSQQPQAPAGWPNFLCVCSVFSSGSVQLHwAQWPPNQSGAASkwFCtsKGLL......GAGPSGIMAADAI..VTDDGAMHVAGVPIVNPST.VVVWevTPGpgnGFQatpK.ASTSTGVPPSL.NPPSwdGFASL
  676-  877 (268.71/141.77)	AVLDADFHSLPSTQHRQLYG.PSLDR.IKCRLLEGTNAQEVrAMVldmqARLLLDMLG.KGIESALINPAAlvSEPWQEtgEKLSLIDPETMAVEPALVLSIQAYVDSVLDLA.SHFITRLRRYAS..FC..RTLAshavtaGTGGNRNMVASPTqnSTSPAASGQGGTANSTGSTqMQAW..VQG...AIA...KiSSTADGVPNSTpNPIS..GPSSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     121.03|      23|     530|     637|     659|       5
---------------------------------------------------------------------------
  637-  659 (46.13/27.29)	RAIAERFWWSLLVGVDWWDAVGC
 1171- 1192 (40.15/22.77)	RDVVTAVWKTGLEGV.WYKCIRC
 1209- 1225 (34.75/18.68)	NQNEKEMWW.....ISRW.AYGC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19745 with Med16 domain of Kingdom Viridiplantae
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