<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19744

Description Luminal-binding protein like (Fragment)
SequenceEFCLGLTLAAEQSPKVGTVIGIDLGTTYSCVGVYRNGHVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAALNAERTIFDVKRLIGRKFDDPEVQRDMKLLPYKIVNKDGKPYIEVKMKDGEVKVFSPEEVSAMILGKMKETAESYLGKKIKDVVVTVPAYFNDAQRQATKDAGVIAGLNVVRIINEPTAAAIAYGLDKTGGEKNILVYDLGGGTFDVSILTIDNGVFEVLSTSGDTHLGGEDFDHRVMDYFIKLIKKKYNKDISKDNKALGKLRREVERAKRALSSQHQTRVEIESMVDGIDFSEPLTRARFEELNMDLFRKTMGPVKKAMEDAGLKKSDIDEIVLVGGSTRIPKVQQLLKDYFNNKEPCKGVNPDEAVAYGAAVQGGILSGEGGEETKDILLLDVAPLSLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQPTVSIKVYEGERSLTKDCHELGKFDLSGIPPAPRGVPQIEVTFEVDANGILHVTAEDKAAKNKQSITITNDKGTLSKEEIEQMVKEAEEFAEEDRKVKERIDARNKLETYIYNMKSTVNDKDKLGDKIDSDDKERIEGVLKDALEWLDDNQSVDKDEFEEKMKEVEAVCNPVIKQAYQKSGGSSMDSEDEESNDEL
Length644
PositionUnknown
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.06
Grand average of hydropathy-0.485
Instability index35.96
Isoelectric point5.00
Molecular weight71342.03
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19744
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.06|      24|      28|     529|     556|       3
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  531-  554 (36.87/27.75)	MVKEAEEFAEEDRKVKERIDARNK
  558-  581 (39.18/16.60)	YIYNMKSTVNDKDKLGDKIDSDDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.67|      11|      28|      87|      97|       4
---------------------------------------------------------------------------
   87-   97 (20.05/11.07)	IGRKFDDPEVQ
  116-  126 (17.63/ 8.87)	IEVKMKDGEVK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.03|      21|     186|     187|     209|       5
---------------------------------------------------------------------------
  187-  209 (30.56/30.56)	INePTaAAIAYG.......LDKTGGE..KNIL
  376-  405 (28.46/17.79)	VN.PD.EAVAYGaavqggiLSGEGGEetKDIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.86|      44|     288|     294|     338|       6
---------------------------------------------------------------------------
  294-  338 (70.89/44.51)	RVE..IESMVDGIDFSEPLTRARFEElNMDLFRKTMGPV.KKAMEDAG
  583-  629 (65.97/37.33)	RIEgvLKDALEWLDDNQSVDKDEFEE.KMKEVEAVCNPViKQAYQKSG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19744 with Med37 domain of Kingdom Viridiplantae
Unable to open file!