<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19739

Description Mediator of RNA polymerase II transcription subunit like
SequenceMAAMEGVVGAHDQSQSQQQQQQPPSKVVERLNSAVQQQLYLDSVKTRAISLFKAITRIIDDMDALARSNSVPKWQDVLSQFSMVNLELFNIVEDIKKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMEMDDNAKREQLLLGMQNLPVSSQIEKLKTRIDMIGAACESAEKVIADTRKAYFSTRQGPTIVPTLDKVQAAKIQEQETLLRNAVNHGEGLRVTGDQRQITSALPLHLVDILTVGDGAQTYPDASGMYMKNTPPQSSNNINSQGNLLQASGSQLAGRAVASPSGAAGTTPFDNTTASPLPYANSPRSGTNMMNTPSPQQQSQQQQQQQQHQQLQQRQKMMQLPQHQQQLLAQQQFRQSSLPGLGQNQLAQMHDLQGQPQQKFQSLHGQHQMQFSPPLGSQQFQGRQLPSGPIQHGIGQNQLNQGNQLNRQLNQFSSNANSALFNAAQGTPNSQMMSNISATMPSQSLLPRMQFGLSGGNRTHASQILSDQMFNMGAANPGNMMPIQQQQQQQQQQHGSQGAFGNMPQNTQNLQPGMVALQNAQQNHPNFQQQRQQNQQ
Length566
PositionHead
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.04
Grand average of hydropathy-0.705
Instability index60.81
Isoelectric point9.34
Molecular weight62317.21
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19739
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     133.19|      27|      27|     319|     345|       1
---------------------------------------------------------------------------
  319-  345 (58.66/17.18)	MMNTPSPQQQ..SQQQQQQQQH..........QQLQQRQ
  347-  375 (39.73/ 9.25)	MMQLPQHQQQllAQQQFRQSSL..........PGLGQNQ
  510-  541 (34.81/ 7.19)	MM....PIQQ...QQQQQQQQHgsqgafgnmpQNTQNLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.99|      31|     124|     261|     292|       2
---------------------------------------------------------------------------
  214-  268 (28.63/ 7.18)	N.HGEG.LRVT...GD.Q...RQITSalPlhlvdiltvGDgaqtypdasgmymkntPPQ...SSNNI
  269-  292 (29.41/10.55)	NsQGNL.LQAS...GS.QLAGRAVAS..P.........SG...........................
  394-  429 (29.95/ 7.61)	..HGQHqMQFSpplGSqQFQGRQL....P.........SG................PIQhgiGQNQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.37|      18|      20|     469|     487|       3
---------------------------------------------------------------------------
  469-  487 (29.58/19.13)	TMPSQSLLPRMqFGLSGGN
  489-  506 (32.79/16.95)	THASQILSDQM.FNMGAAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.47|      22|     540|       1|      22|       4
---------------------------------------------------------------------------
    1-   22 (38.93/14.92)	MAAMEGVVGAHDQSQSQQQQQQ
  544-  565 (40.54/15.84)	MVALQNAQQNHPNFQQQRQQNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.03|      16|      32|      58|      73|       5
---------------------------------------------------------------------------
   58-   73 (26.84/19.67)	IIDDMDALARSNSV.PK
   91-  107 (21.19/14.16)	IVEDIKKVSKAFVVhPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.90|      14|      22|     431|     449|       8
---------------------------------------------------------------------------
  431-  449 (11.59/16.08)	QGNQlNRQLnqfSSNAnSA
  455-  468 (27.30/11.05)	QGTP.NSQM...MSNI.SA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19739 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TYPDASGMYMKNTPPQSSNNINSQGNLLQASGSQLAGRAVASPSGAAGTTPFDNTTASPLPYANSPRSGTNMMNTPSPQQQSQQQQQQQQHQQLQQRQKMMQLPQHQQQLLAQQQFRQSSLPGLGQNQLAQMHDLQGQPQQKFQSLHGQHQMQFSPPLGSQQFQGRQLPSGPIQHGIGQNQLNQGNQLNRQLNQFSSNANSALFNAAQGTPNSQMMSNISATMPSQSLLPRMQFGLSGGNRTHASQILSDQMFNMGAANPGNMMPIQQQQQQQQQQHGSQGAFGNMPQNTQNLQPGMVALQNAQQNHPNFQQQRQQNQQ
248
566










Molecular Recognition Features






MoRF SequenceStartStop




NANANA