<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19738

Description Mediator of RNA polymerase II transcription subunit 33A like
SequenceMAVSVQRTLWDGVIEMTKSAQERGGDPVLWTIQLSSALSAAGVPIPSTELAELLVSQICWSNNVPIAWKFLEKALMMKIVPPMHVLALLSVSVIPSRRFHPAAYRLYMELLKRHGFLFASQSNCPNYEKIMKSIDEVLHLSQIFSLPTSEPGLLIVEFAFSIVWRLLDASLDDEGLLELTPEKKSRWLTGTQDMEIDSHDSFNEKRTGRHEGLCKINTVMAVEIIGEFFKHKVTSRILYLARQNMRSHWACFIQHLRLLTEHSSALRSSKDITPEALLQLTSDTREVLSRKCKTSSQKQFHAVMASGSLASSSGQCHGTSRSSLWLPFDLFLEDTMDGSQVTATSAVEVLTGLAKALQAVNQTTWQDTFLGLWIAALRLVQRERDPSEGPVPRLDTCLCLLLSVTTLAIFDIIGEEEAALNNEAECTTNCQRKEKHVSGKRRRDLVASLQQLGDFEDLLAPPVPVISVANQAAAKAMVFLSGLTVGSGSFLDGMSLNDMPVNCSGNMRHLIVEACIARSILDTSAYLWPDYVKGRINQIPRSASGQMPGWSSLIKGSPLTPPMVNALVSTPASSLAEIEKIYQIAVSGSDDEKISAAKILCGASLIRGWNIQEHTVLLITKLLSPPVPVDYSGSESHLIRYTPFLNVLLVGISSIDCIQIFSLHGVVPALAGALMPICEVFGSMVPRTLPTGEEISAHAVFSNAFTLLLKLWRFDRPPLEHVTGDVAPVGSQLTPEYLLLVRNSQLASYVNTPRDQHKSKRVSKYSSPSSTEPIFMDTFPKLKGWYRQHQECIAAILSGLKHGSPVHQIVDGLLSMMFRKVNRGSQPLTPTTSGSSNSSGPVTEDVSLQLKLPAWDILEAVPFVLDAALTAYAHGRLSPRELVTGLKDLADFLPASLATLVSYFSAEVTRGIWKPAFMNGTDWPSPAANLAIVEQQIKKILAGTGVDVPSLAVGGSAPATLPFPLAVLVSLTITYKLDRTTEHLLFLIGPALISLAAGCPWPCFPIMASLWAQKVKRWSDFLVFSASRTVFHHNSDVVHQLLRSCFTSTLGLNSSPISSNGGIGALLGHGFGSHFSGGISPVAPGILYLRVHRSVRNVMFMTEEIVVLLMRSVKEIVSCGLPTEKIDKLKTAKYGMRYGQVSLSAAMLRVKIAATLGASLVWISGGLSLVQSLIKETLPSWFISDHKLELDGGDSGGMVAMLRGYALAYFAVLSGTFAWGMDSSSPASMRRKKVIGTHLDFLASALDGKISLGSDRATWRAYVSGFVSLVVGCTPMWLREIDVDILKRVGKGLVQWNEEELALALLGVSGMGAMGAAAELIIESEF
Length1326
PositionTail
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.07
Grand average of hydropathy0.165
Instability index45.07
Isoelectric point7.38
Molecular weight144421.74
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19738
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     483.07|     118|     125|     841|     958|       1
---------------------------------------------------------------------------
  841-  958 (195.74/146.07)	PVTEDVSLQLKLPAWDILEAVPFVLDAALTAYAHGRLSP.RELVTGL.....KDLADFLPASLA......TLVSYFSAEVTRGIW....KPAFMN..GTDWPSP.AANLAIVEQQIKKILAGT...GVDVPSLAVGGSAP
  964- 1081 (159.21/116.97)	PLAVLVSLTITYKLDRTTEHLLFLIGPALISLAAGCPWPcFPIMASLwaqkvKRWSDFLVFSAS......RTVFHHNSDVVHQLL....RSCFTStlGLN.SSPiSSNGGI......GALLGH...GFG..SHFSGGISP
 1113- 1227 (128.13/92.20)	.VKEIVSCGLPTEKIDKLKTAKYGMR.......YGQVSL.SAAMLRV.....K.IAATLGASLVwisgglSLVQSLIKE.TLPSWfisdHKLELD..GGDSGGM.VAMLRGYALAYFAVLSGTfawGMDSSSPA......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.91|      12|     125|     500|     511|       3
---------------------------------------------------------------------------
  500-  511 (25.38/15.03)	PVNCSGNMRHLI
  628-  639 (23.54/13.43)	PVDYSGSESHLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.77|      26|     364|       9|      53|       8
---------------------------------------------------------------------------
   11-   36 (46.29/49.15)	DGVIEMTKSAQERGGDPVLWTIQLSS
  811-  836 (46.48/13.93)	DGLLSMMFRKVNRGSQPLTPTTSGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.75|      17|     360|     377|     393|      10
---------------------------------------------------------------------------
  377-  393 (30.61/16.28)	LRLVQRERDPSE...GPVPR
  709-  728 (25.32/12.27)	LKLWRFDRPPLEhvtGDVAP
  738-  754 (25.82/12.65)	LLLVRNSQLASY...VNTPR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19738 with Med33 domain of Kingdom Viridiplantae
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