<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19733

Description ATP-dependent DNA helicase Q-like
SequenceMIKETHMSGGNSVGGSKCGDKPPKVNLLQHVNAHDNFSTQNKFLSSNFLYSLPAQKRNSEVSARARLMACRVLNLQRVQTTQADKAWQVLSSGQFSCRNYVKPGKTVPVVKDINDKSSQNVRKNTQQSPSYKQNNIPGCMQIHKTSSGTNAKLNEPAKCTGSSLPFHPSNVAETGKVARGQNEGYMPTCNRFHAQATNGIFSNRIVSTSQAKGSGGTSPDCIDDDDILENIDVDQIVMEHYQSTCTPQPSISKLPPVTPTVDKNNFVRDEETCLPSELCLSCNHGFMLGLCPEASNHLQDMKDKLIALSNELLDNVADLSSNEIEKLRQERLQLNKQVQQLEKYLRSTSVDEERQKSQFSASTAPSRAFQYETPPTSAFRIDSMRSNAQSHIVNGAVGYDGWNSSSFSFSSVDRFGASSFPVEREQYVPKNVEVNYIEGSNDKKWSSRDFPWTNKLEDNNKKVFGNHSFRPNQREVINATMSGHDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELSSDYCKYKLLYVTPEKVAKSDVLLRHLDSTYARESLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLGLTATATASVKEDVVQALGLVNCIVFRQSFNRPNLCYSVIPKTKKCVEDIDGFIKKNHFDECGIIYCLSRMDCEKVAEKLQECGHKAAFYHGSMDPAQRAFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQHSSCVLYYSYSDYIRVQHMITQGAVEQSPLPYGYKSTNMASSGRILETNTENLRKMVNYCENDVECRRILQLIHFGERFNPSNCKRTCDNCSKNRSFIEKDVTETAKQLVEVVKLTGQQFSSSHILEVYRGSLSQFVKKHKHNTLKLHGAGKHLTKSEASRILHHLVVADFLVEDVKKSDIYGSLSSILKVNESKACLLWSGGQKITLRFPSSDNASKLSKSGVPPAKGSLISGRQSPPQMEIPSQPQSEVDSVLSAKLYSALRKLRTGLLKESDNQGLTAYHIFGNATLQAISRKIPRTKEELLDVHGIGNVKLTKYGDRVLETIEATIKEHNMAEKNSSGSNGSSDSVKRRRDAARVSSGDSKDDGDFMESTGRSKKRTLTKPIKTPKFVGFREADSYNEYADVDPDCYGSDLDMENSVSKATVDNNDGGRVLPSWSMPLP
Length1227
PositionUnknown
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.07
Grand average of hydropathy-0.539
Instability index49.48
Isoelectric point8.61
Molecular weight136610.78
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:EnsemblPlants
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA replication	GO:0006260	IEA:InterPro
double-strand break repair via homologous recombination	GO:0000724	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19733
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.31|      52|      62|     890|     941|       1
---------------------------------------------------------------------------
  890-  941 (86.57/58.09)	AKQLVEVVKLTGQQFSSSHILEVYRGSLSQFVKKHKHNTLKLHGAGK..HLTKS
  953- 1006 (81.74/54.41)	ADFLVEDVKKSDIYGSLSSILKVNESKACLLWSGGQKITLRFPSSDNasKLSKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.31|      30|     283|     530|     560|       3
---------------------------------------------------------------------------
  530-  560 (50.42/43.79)	QANIPAAYLSANMEWT.....EQQEILRELsSDYCK
  811-  845 (49.89/37.72)	QSPLPYGYKSTNMASSgrileTNTENLRKM.VNYCE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19733 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DLDMENSVSKATVDNNDGGRVLPSWSMPLP
2) IEATIKEHNMAEKNSSGSNGSSDSVKRRRDAARVSSGDSKDDGDFMESTGRSKKRTLTKPIKT
3) PVVKDINDKSSQNVRKNTQQSPSYKQNNIPGCMQIHKTSS
4) SKLSKSGVPPAKGSLISGRQSPPQMEIPSQPQ
1198
1110
108
1001
1227
1172
147
1032










Molecular Recognition Features






MoRF SequenceStartStop




NANANA