<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP19732

Description Pre-mRNA-processing protein like
SequenceMANNAQFSTIQPLRLPLPLPPGPPQGAPPSMQMQFRPAVPLPVVPAQQSQPYNPATSQQFQHVGHTNIGIPSHSQQFHFSQPVQQLPARPGLPPPQAIPLAEVQANRPSISVSPLPLHNAQIPNNYVAGLNGPRMPLSSSYTFGASSVGQLQKSADASTLYQQTSQTNMSSFPAGGQPWLPTGLQSISSIVPTQQQQIGEQSSATTTAVVAATVESNPIEKLPSEWLEHTSRYGKKYYYNKKTKLSTWEKPLELMTPIERADASTDWKEHAGPEGRKYYYNKVTKQSKWKIPDELKLAREKVKMAFTGGTQAGKDAPPPPSPPAAPPPPPPPPAVHSVVKSPPSDAVTLSSSAHGLVSSPNQVEPISAVVYAKSMTNSGQSSPVVPSMVTTNTIESQTPVETIMPTSDVSRSTKTSNILVTTTTTQMSIVDDIEAAAAQDVVTGAEGVSTGVIEEAEKGKGSDWKINDAALGEKTVVQEPLVYDSKLEARNAFKALLESTNVGSDWTWDQAMRVIINDQRYGALRTLGERKQAFNEFVGQRKKQDAEERRARQKRALEDFRKMLEESEELTPSTRWSKAIAIFEDDERFKAVERAKDREDLFEDYVEELEKKERAKALEERKWNRREYLNLLRSCDFITASSQWRKVQDRLEADERCSRLDKIGRLEIFQEYIRDLEREEEGHMKIRMEELRKAERKNRDDFRKLMEGHVVSGILTAETHWRDYCMKVKDVPAYLAVSSNTSGSTAKDLFEDVAEELQKQYLEDKARIKDAMKLRKIVLSSTWTLEDFKAAISEDITSPLSDTNLKCVFDELLERVKEKEEKEAKRRKRLADDFHDLLCTSKDLTSSFKWEDCKQLLEDRQESWFIGEESLLRDVFDKYITELKEKAKEKERRRRDDKASKASSHFCAKRERDAKDREKKKAKHSREKGREYESKHGKDGTHHDNAGKNESYVLENKRSGKDKDKQHRKRHVSYVDDLSASENEKDRSKNSHRHSSDRKKSKQMELWSTYDPDSEIKHKRHKKDHQNGSRRNDDSDEPKEGEFGEDGEIW
Length1050
PositionUnknown
OrganismActinidia chinensis var. chinensis
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> Ericales> Actinidiaceae> Actinidia.
Aromaticity0.07
Grand average of hydropathy-0.937
Instability index55.33
Isoelectric point7.64
Molecular weight119007.89
Publications
PubMed=29661190

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP19732
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.53|      37|      40|     218|     254|       1
---------------------------------------------------------------------------
  218-  254 (73.24/39.57)	PIEK..LPSEWLEHTSRYGKKYYYNKKTKLSTWEKPLEL
  257-  295 (69.29/37.08)	PIERadASTDWKEHAGPEGRKYYYNKVTKQSKWKIPDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     463.26|      64|      65|     780|     843|       3
---------------------------------------------------------------------------
  449-  501 (50.87/29.42)	.S.TG.VIEE.AEKG.........KGSDW..KI...ND.AALgeKTVVQEP...L.VY..................DSKLEARNA..FKALL....ESTN
  503-  569 (69.19/43.08)	GS.DW.TWDQaMRVI.........INDQRYGAL...RTlGER..KQAFNEF...VgQR.......KKQD.AEE...RRARQKRALEDFRKML...EESEE
  641-  714 (58.56/35.16)	SS.QWrKVQD.RLEA..........DER.CSRL...DK.IGR..LEIFQEYirdL.EReeeghmkIRME.ELR...KAERKNR..DDFRKLMeghVVSGI
  716-  777 (58.37/35.02)	TA.ET.HWRD.YCMK.........V.KDVPAYLavsSN.TSG..STAKD.L...F.ED.......VAEE.LQKqylEDKAR...IKDAMKL......RKI
  780-  843 (103.45/68.63)	SS.TW.TLED.FKAA.........ISEDITSPL...SD.TNL..KCVFDEL...L.ER.......VKEK.EEK...EAKRRKRLADDFHDLL...CTSKD
  846-  911 (58.43/35.06)	SSfKW...ED.CKQLledrqeswfIGEE..SLL...RD........VFDKY...I.TE.......LKEKaKEK...ERRRRDDKASKASSHF...CAKRE
  924-  978 (64.38/39.50)	HS.RE.KGRE.YESK.........HGKDGTH.....HD.NAG..KN.ESYV...L.EN.......KRSG.KDK...DKQHRKRHVSYVDDL.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.79|      16|      35|      85|     100|       4
---------------------------------------------------------------------------
   17-   29 (24.69/ 8.79)	.LPLP..PG..PPQGAPP
   85-  100 (33.34/14.25)	QLPAR..PGLPPPQAIPL
  121-  137 (20.75/ 6.30)	QIPNNyvAGLNGPR.MPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.13|      18|      22|     998|    1017|       6
---------------------------------------------------------------------------
  998- 1015 (32.21/13.66)	RKKSKQ.MELWSTYDPDSE
 1018- 1036 (26.92/15.96)	HKRHKKdHQNGSRRNDDSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.43|      44|     225|     164|     212|       8
---------------------------------------------------------------------------
  152-  195 (61.78/34.98)	..QKSADASTLYQQTSQtnMSSFPAGGQPWLPTGLQSISSIVPTQQ
  341-  374 (52.52/21.78)	SPPSDAVT...........LSS.SAHGLVSSPNQVEPISAVVYAKS
  379-  406 (40.13/20.01)	GQSSPVVPSMVTTNTIE...SQTP.............VETIMPT..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP19732 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKEKERRRRDDKASKASSHFCAKRERDAKDREKKKAKHSREKGREYESKHGKDGTHHDNAGKNESYVLENKRSGKDKDKQHRKRHVSYVDDLSASENEKDRSKNSHRHSSDRKKSKQMELWSTYDPDSEIKHKRHKKDHQNGSRRNDDSDEPKEGEFGEDGE
2) EKVKMAFTGGTQAGKDAPPPPSPPAAPPPPPPPPAVHSVVKSPPSDAVTLSSSAHGLVSSPNQ
3) KPLELMTPIERADASTDWKEHAGPEGRKYY
4) SAVVYAKSMTNSGQSSPVVPSMVTTNTIESQTPVETIMPTSDVSRSTKTSNI
5) TIQPLRLPLPLPPGPPQGAPPSMQMQFRPAVPLPVVPAQQSQPYNPATSQQFQHVGHTNIGIPSHSQQFHFSQPVQQLPARPGLPPPQAIPLAEVQA
887
300
250
367
9
1048
362
279
418
105










Molecular Recognition Features






MoRF SequenceStartStop




NANANA